PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr1g0376291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25473.3 Da PI: 9.8989 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.5 | 5.5e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+lye+ss RcHm_v2.0_Chr1g0376291 9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQNGRLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 69.2 | 1.3e-23 | 82 | 170 | 9 | 97 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 e+ +++l++e+a + k+ie L+ +qR+llG dL+s+s eL+q+ +qLe+sl +R++K +l++eqie+l+ k + l een +L+ RcHm_v2.0_Chr1g0376291 82 EVEQCMQQLKHESADMAKKIEILEASQRRLLGHDLDSCSAPELNQISSQLERSLCIVRERKAQLFMEQIERLKAKGRLLLEENIKLH 168 5677799*******************************************************************************9 PP K-box 96 kk 97 ++ RcHm_v2.0_Chr1g0376291 169 TE 170 87 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence |
MVRGKIQMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ NGRLYEFSSS 60 DMQKTINQYH KHAKGVQTNT IEVEQCMQQL KHESADMAKK IEILEASQRR LLGHDLDSCS 120 APELNQISSQ LERSLCIVRE RKAQLFMEQI ERLKAKGRLL LEENIKLHTE CGARRCQKPL 180 IQKKGVGAAS CNWKNSSQSS SSQTISNSDQ VETRLFIGPP VLHSG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62165.3 | 9e-76 | MIKC_MADS family protein |