PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0376271 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25843.8 Da PI: 10.2556 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.9 | 4.2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien ++rqvtfskRrng+lKKA+ELSvLCdaevavi+fs++++lye+ss RcHm_v2.0_Chr1g0376271 9 KRIENATRRQVTFSKRRNGLLKKAYELSVLCDAEVAVIVFSQKNRLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 72.5 | 1.2e-24 | 81 | 171 | 8 | 98 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 e+ +++l++e+a + k+ie L+ +qR+llG dL+s+s +eL+q+ +qL++sl+ +R++K +l++eqie+ + ke+ l en +L RcHm_v2.0_Chr1g0376271 81 TEVEQYMQQLKHESADMTKKIEILEASQRRLLGHDLDSCSAQELNQISSQLDRSLRIVRERKAQLFMEQIERVKAKERLLLGENAKL 167 4567889******************************************************************************** PP K-box 95 rkkl 98 ++k RcHm_v2.0_Chr1g0376271 168 HTKC 171 *985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MVRGKIEMKR IENATRRQVT FSKRRNGLLK KAYELSVLCD AEVAVIVFSQ KNRLYEFSSS 60 NMQKTIKQYH KHAKGALTKT TEVEQYMQQL KHESADMTKK IEILEASQRR LLGHDLDSCS 120 AQELNQISSQ LDRSLRIVRE RKAQLFMEQI ERVKAKERLL LGENAKLHTK CGSRPCQKPI 180 VQEKGVGEAS CNWMNSSPSS RSQTISNSDQ VETRLFIGPP VMRCE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 2e-77 | MIKC_MADS family protein |