PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0376191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 26131.3 Da PI: 8.0585 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.9 | 9.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk+nrqvtfskRr g++KKA+E+SvLCda+va+i+ s+gk+++++s RcHm_v2.0_Chr1g0376191 9 KKIENKINRQVTFSKRRLGLFKKAQEISVLCDAQVALIVSCSRGKVFDFAS 59 68**********************************************986 PP | |||||||
2 | K-box | 94.9 | 1.3e-31 | 77 | 172 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 s+ +++e+++++l+qe++kLk ++e+Lqr+qRh+lGedLe+L lkeL++Le+qL++ l++ R++K++++l+q+e l++ke++l+e++ RcHm_v2.0_Chr1g0376191 77 SQDNVAENETQNLYQEVSKLKVKYESLQRSQRHFLGEDLEKLRLKELENLEKQLDRTLSQARQRKMQMMLDQLEALRRKENDLEEIH 163 334499********************************************************************************* PP K-box 92 kaLrkklee 100 k+L+++lee RcHm_v2.0_Chr1g0376191 164 KQLKSELEE 172 *****9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence |
MGRGKVELKK IENKINRQVT FSKRRLGLFK KAQEISVLCD AQVALIVSCS RGKVFDFAST 60 NDVNEILNRY QQSCYSSQDN VAENETQNLY QEVSKLKVKY ESLQRSQRHF LGEDLEKLRL 120 KELENLEKQL DRTLSQARQR KMQMMLDQLE ALRRKENDLE EIHKQLKSEL EEREKHSNND 180 DDEALIQGRP GGEPTVAAGA SHENISTKTR SANANQQEPT YEYARA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 7e-47 | MIKC_MADS family protein |