PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0376121

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 990aa MW: 111132 Da PI: 7.2691

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0376121	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27	1.2e-08	206	273	16	83
trihelix 16 emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 ++ + r+k ++ + +ev++++++ g++r +k+ kw+n+ ++++k+ e+e++ + e+ + +yf+ RcHm_v2.0_Chr1g0376121 206 DITGQPTRAKTRADKDKEVAEFLQKNGINRDAKTAGTKWDNMLGEFRKVYEWERGAEREQIGNKSYFR 273 56667778899999*****************************************9888888888885 PP

Sequence ? help Back to Top
Protein Sequence Length: 990 aa Download sequence
MGETKGDNPN KQQQQPQQIS ASPNDPLEEA SPLTVVVTGA TAPFNIPAPL YVPISGATSS 60 SLPFDQQQFE AVNPKRPRYT STGQWKLLPS PSSQQKHTPT QTPSPNPKTH PQSHTTTGAS 120 SSDTASSPPH SPLPSLSATS GQDTTKTEGE EQNPSLHRSQ FRRGKYVSPV WKPHEMLWLA 180 KAWRAIYQSQ GSDGSGSSSR TEHHSDITGQ PTRAKTRADK DKEVAEFLQK NGINRDAKTA 240 GTKWDNMLGE FRKVYEWERG AEREQIGNKS YFRLSPYERK LHRLPASFDE EVFDELAQFM 300 GSRMRTPPIS RTSDSTRTQS LYVTTSTILP PPPSFRDDDL PLSGRARQLM IMSGGGEVPF 360 YPSGRSGSLL GFDHLPPYHH QSSLDYAAGV SSSTSSLTKE LRRIGKIRMT WEESVSLWAE 420 EGEHHRGRVK IQGGSSFLNA DELAFFDDSM VACTMEAFED GTLRGFSVDR FVSGQQVKVF 480 GRRKPSTPGF TEKTLPFAES SIRSMPPWEF QDPSEYYITC LRVPPPSLPR LSELSSYLLQ 540 PPPEELRFPL RKDVYRDLPQ GRETFFTASN DSLDCRAITY DIVSPIIRSN YGLSAATSRD 600 SFIGLWDDCI NRFVSKFSCV DMVFIRKATS SISITEALQD QWPNVTGFVK NYCLWRGEEI 660 DQVRDSHIHP SKSLAEKLQW TYNDLPYIFG YYSIGNMVTF CALSKGGQDR IIETNLHTID 720 LSLPSDRLKA LVLCYRVAGL LPLLADRCFN INSGTTSTSN GAAASYKFMF GPYSDFERVD 780 LGNGNIVELT PNTVTRFFSN QRKWLAVKEI YDFLDHRIPH AEYIHRSSEK DLALVFKPRG 840 CKFKPRNCDE LVEALKYVTK ALVALHDLSF MHRDICWDKV MRSTERDNEW LLCGFDEAVG 900 APQLNPYQVA AAERGEHAPE LERALHGVKV DVWGVGHLVR TCGLAGVPKM LRELQNRCLD 960 QNPELRPTAA DCYHHLLQLQ SSLSVVTAMM

Sequence ? help Back to Top

Protein Sequence Length: 990 aa Download sequence

MGETKGDNPN KQQQQPQQIS ASPNDPLEEA SPLTVVVTGA TAPFNIPAPL YVPISGATSS  60
SLPFDQQQFE AVNPKRPRYT STGQWKLLPS PSSQQKHTPT QTPSPNPKTH PQSHTTTGAS  120
SSDTASSPPH SPLPSLSATS GQDTTKTEGE EQNPSLHRSQ FRRGKYVSPV WKPHEMLWLA  180
KAWRAIYQSQ GSDGSGSSSR TEHHSDITGQ PTRAKTRADK DKEVAEFLQK NGINRDAKTA  240
GTKWDNMLGE FRKVYEWERG AEREQIGNKS YFRLSPYERK LHRLPASFDE EVFDELAQFM  300
GSRMRTPPIS RTSDSTRTQS LYVTTSTILP PPPSFRDDDL PLSGRARQLM IMSGGGEVPF  360
YPSGRSGSLL GFDHLPPYHH QSSLDYAAGV SSSTSSLTKE LRRIGKIRMT WEESVSLWAE  420
EGEHHRGRVK IQGGSSFLNA DELAFFDDSM VACTMEAFED GTLRGFSVDR FVSGQQVKVF  480
GRRKPSTPGF TEKTLPFAES SIRSMPPWEF QDPSEYYITC LRVPPPSLPR LSELSSYLLQ  540
PPPEELRFPL RKDVYRDLPQ GRETFFTASN DSLDCRAITY DIVSPIIRSN YGLSAATSRD  600
SFIGLWDDCI NRFVSKFSCV DMVFIRKATS SISITEALQD QWPNVTGFVK NYCLWRGEEI  660
DQVRDSHIHP SKSLAEKLQW TYNDLPYIFG YYSIGNMVTF CALSKGGQDR IIETNLHTID  720
LSLPSDRLKA LVLCYRVAGL LPLLADRCFN INSGTTSTSN GAAASYKFMF GPYSDFERVD  780
LGNGNIVELT PNTVTRFFSN QRKWLAVKEI YDFLDHRIPH AEYIHRSSEK DLALVFKPRG  840
CKFKPRNCDE LVEALKYVTK ALVALHDLSF MHRDICWDKV MRSTERDNEW LLCGFDEAVG  900
APQLNPYQVA AAERGEHAPE LERALHGVKV DVWGVGHLVR TCGLAGVPKM LRELQNRCLD  960
QNPELRPTAA DCYHHLLQLQ SSLSVVTAMM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein