PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0375951

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 1349aa MW: 153304 Da PI: 6.9834

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0375951	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	79.4	4.1e-25	1274	1334	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqKe+ gs++pr+YYrCt++ gC+++k+v+r +++p + +tY+g+H+++ RcHm_v2.0_Chr1g0375951 1274 DDGHAWRKYGQKEILGSRYPRNYYRCTYRmdqGCMATKHVQRISDEPVLYRTTYRGNHTCR 1334 8*************************99999************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1349 aa Download sequence
MAASSSSSSS AAVGRWNYDV FISFRGDDTR KIFVGHLYKA LHQKAINTFI DSDELRNGNN 60 PSELLEAIAD SRLSVVVFSK HYASSEWCLR ELVKIVECMK TMKQIVVPVF YELDSSDIRK 120 LKASFEQAFA EHLHDSNADV EEVQRWKSAL VEASNLSGWD SRNYEDDAKL IEKIVGDISK 180 RLIRVSSGID NVLVGMDKHI AEIDVLLCLG VDDVRGIGIF GMPGIGKTTI ARAVYDEITC 240 QFEHYCFLEN VKDGFKNKGA VHMQEELLSR ILKKKVCTLG NLNTGFKMVM ERLNKKRVLL 300 VLDDVENFSQ IEALLGKQCS FGGGSRIIIT TRDMQSLSGV QERYNPKFLS DDEDLELFMQ 360 YAFRTHQPTG DYDSLSRLAI EYAQGLPLGL KVLGAFLDSK SACEWEDELE RIKKIPHIEI 420 QGLLRTSFDG LDPLQKDIFL DIACFFRGMN KGYVTKVLES CGFYPHSGLR VLLDRALITI 480 SDDNRLEMHD LLQEIGWEIV RRQSIKEPGK RSRLWVYEDV DHVFTQNTAT DAVEGIMLDL 540 SRSKEVYLAS EAFVKMTRLR LLRIISNNHS RQDLCHPSDD TQQHLSGDFK FLSNELRILH 600 WHGFPLKSLP SNFIPKNLVE LDMRSSHIEQ LWEGIKPLKK LTIINLSHSQ YLKKIPDFTE 660 AMNMKKLILD GCSSLLEVHP SISALKNLVV LSLKGCKAVQ SLPGSIYMKS LKTLDLSGCS 720 NLKMFPEISG IMEDLSELYL NETAIEKLPS SIEQLQGLVL LNMADCRSLV CLPDNICNLA 780 YLTNLTLSGC SKLYRLPENL GNLESLMILE IERSGIKELP FSILRVNQLK RLSCDGCKEM 840 MVPLSSWSSS IKGYYTYSGM LHLDLNDCNL MVLSDGIAHL SSLRTLELRR NNLESLPAAM 900 NRLRRLSHLE LEACKRLKSI PELSSSISYI DAHDCTALET VSTPKPRSST NLCFTFSNCL 960 QLIQTNLFRD IVETYSHYQG SYLRPLSFSM SLPGSEIPHW FNHQCKGFLV NVQLPQNWFD 1020 DKFLGFAICG VSNFKGAHND ASDLSAVCFC TFKGNHGEYK FSFHLLDWGF RTNRFLQSDH 1080 MFLGYVPWSQ YRFSDGGKPV NERYYTEATF EILVENGVYA HDDYRTVIRR HCITSCGVRL 1140 FHGNYMEPQN LSITQPNSHH DSSEILLDTA RKRKREIAGV KMQWKWPPAE EVFTEQEQEG 1200 SLSREGSLVG EGSSAGKRSS AGEGVLSILS SVATVESGAN ERDGPTIPNR TNRRRRTNLR 1260 NSATWIRDTN QLIDDGHAWR KYGQKEILGS RYPRNYYRCT YRMDQGCMAT KHVQRISDEP 1320 VLYRTTYRGN HTCRPVSSTQ DIEEFYLAY

Sequence ? help Back to Top

Protein Sequence Length: 1349 aa Download sequence

MAASSSSSSS AAVGRWNYDV FISFRGDDTR KIFVGHLYKA LHQKAINTFI DSDELRNGNN  60
PSELLEAIAD SRLSVVVFSK HYASSEWCLR ELVKIVECMK TMKQIVVPVF YELDSSDIRK  120
LKASFEQAFA EHLHDSNADV EEVQRWKSAL VEASNLSGWD SRNYEDDAKL IEKIVGDISK  180
RLIRVSSGID NVLVGMDKHI AEIDVLLCLG VDDVRGIGIF GMPGIGKTTI ARAVYDEITC  240
QFEHYCFLEN VKDGFKNKGA VHMQEELLSR ILKKKVCTLG NLNTGFKMVM ERLNKKRVLL  300
VLDDVENFSQ IEALLGKQCS FGGGSRIIIT TRDMQSLSGV QERYNPKFLS DDEDLELFMQ  360
YAFRTHQPTG DYDSLSRLAI EYAQGLPLGL KVLGAFLDSK SACEWEDELE RIKKIPHIEI  420
QGLLRTSFDG LDPLQKDIFL DIACFFRGMN KGYVTKVLES CGFYPHSGLR VLLDRALITI  480
SDDNRLEMHD LLQEIGWEIV RRQSIKEPGK RSRLWVYEDV DHVFTQNTAT DAVEGIMLDL  540
SRSKEVYLAS EAFVKMTRLR LLRIISNNHS RQDLCHPSDD TQQHLSGDFK FLSNELRILH  600
WHGFPLKSLP SNFIPKNLVE LDMRSSHIEQ LWEGIKPLKK LTIINLSHSQ YLKKIPDFTE  660
AMNMKKLILD GCSSLLEVHP SISALKNLVV LSLKGCKAVQ SLPGSIYMKS LKTLDLSGCS  720
NLKMFPEISG IMEDLSELYL NETAIEKLPS SIEQLQGLVL LNMADCRSLV CLPDNICNLA  780
YLTNLTLSGC SKLYRLPENL GNLESLMILE IERSGIKELP FSILRVNQLK RLSCDGCKEM  840
MVPLSSWSSS IKGYYTYSGM LHLDLNDCNL MVLSDGIAHL SSLRTLELRR NNLESLPAAM  900
NRLRRLSHLE LEACKRLKSI PELSSSISYI DAHDCTALET VSTPKPRSST NLCFTFSNCL  960
QLIQTNLFRD IVETYSHYQG SYLRPLSFSM SLPGSEIPHW FNHQCKGFLV NVQLPQNWFD  1020
DKFLGFAICG VSNFKGAHND ASDLSAVCFC TFKGNHGEYK FSFHLLDWGF RTNRFLQSDH  1080
MFLGYVPWSQ YRFSDGGKPV NERYYTEATF EILVENGVYA HDDYRTVIRR HCITSCGVRL  1140
FHGNYMEPQN LSITQPNSHH DSSEILLDTA RKRKREIAGV KMQWKWPPAE EVFTEQEQEG  1200
SLSREGSLVG EGSSAGKRSS AGEGVLSILS SVATVESGAN ERDGPTIPNR TNRRRRTNLR  1260
NSATWIRDTN QLIDDGHAWR KYGQKEILGS RYPRNYYRCT YRMDQGCMAT KHVQRISDEP  1320
VLYRTTYRGN HTCRPVSSTQ DIEEFYLAY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	1e-128	WRKY family protein