PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0375031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 172aa MW: 19349.7 Da PI: 6.6813 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37 | 6.2e-12 | 29 | 116 | 7 | 96 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 + d k g l ++++g + + l+ g+ W+vkl+ + ++++++l++GW+ F + L++gD++vF ++g+ s f RcHm_v2.0_Chr1g0375031 29 NVDDIKAGKKELRAAAVKKYGDQMGD--HIFLKVpNCGEPWKVKLRKSPSGNQMWLEEGWEAFTNFYLLEQGDTMVFNYEGKhSHF- 112 55556666666666777778766444..5667764568*******88888888**************************9976777. PP .EEEE CS B3 92 lvvkv 96 v++ RcHm_v2.0_Chr1g0375031 113 -QVRI 116 .6665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence |
MASSAKRNRK GKRPAVPEDS PFFCLRIVNV DDIKAGKKEL RAAAVKKYGD QMGDHIFLKV 60 PNCGEPWKVK LRKSPSGNQM WLEEGWEAFT NFYLLEQGDT MVFNYEGKHS HFQVRIIGWD 120 DMETDYPRHG DEVKAMVISS GSSADGQENE ARVIVISSGS SADDHENEAR AK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-11 | B3 family protein |