PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0372521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WRKY | ||||||||
Protein Properties | Length: 166aa MW: 19261.5 Da PI: 9.9958 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 60.4 | 3.3e-19 | 56 | 114 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg +WrKYGqK+ +s++pr Y+rCt++ gC+++k+v++ + ++ ++tY g+H+++ RcHm_v2.0_Chr1g0372521 56 DDGQAWRKYGQKMNLNSRHPRCYFRCTHKydqGCKATKHVQQLQ--DTMYKTTYYGNHTCR 114 8***************************99999**********9..6899********996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence |
MLPGVEAFSR WEWPPKVDRS SASESKKRPG LKDQSNSYKR RKNSESWTVV SPELTDDGQA 60 WRKYGQKMNL NSRHPRCYFR CTHKYDQGCK ATKHVQQLQD TMYKTTYYGN HTCRDIIKGP 120 QLIMGASDPH KYWWIPNHQT TVSSEAGSIT NYNKKDHQGS HFSSSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 42 | KKRPGLKDQSNSYKRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 8e-28 | WRKY family protein |