PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0372491

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 1355aa MW: 153169 Da PI: 6.2852

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0372491	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.4	6e-28	1282	1343	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+YYrCt + gC ++k+v+r++edp +v+itY+g+H+++ RcHm_v2.0_Chr1g0372491 1282 LDDGFSWRKYGQKDILGAKYPRGYYRCTNRniqGCLATKQVQRADEDPMIVKITYQGRHTCT 1343 59************************998889************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1355 aa Download sequence
MAASSSLSSG GRWNYDVFLS FRGQDTRKIF VGHLHKALDL KAINAFIDSE DLCKGNDLSE 60 LLRAIEDSRL SIVVFSQNYA SSTWCLKELV KILECVAAKK QVVVPIFYEV DPSDIRKLKG 120 SFAEAFARHE QDYNANMEEV NRWKIALTEA TNLSGWDSRN YKDDAKFIEK IVEDISEKFV 180 HISSNKVNDL VGMDSHVEKM CSLLCLGGDD VRVVGVCGMP GIGKTTIAKA VYDKLLCQFE 240 HYCFLENVKD GFKNNGAIHM QEELLSRIFE KRVRCLGTLS KGSKMIMERL SKKKVLLVLD 300 DVENFAQIEA LLGNQHSFGG GSRIIVTTRD IQSLSGVDAR YSPMFLSDDE ALELFMQYAF 360 RTNQPTREYD PLSRRAVEYA QGLPLALKVL GAFLDDKSIC EWEDELEKIK EIPHIEIQGV 420 LKKSFDGLDP SQKDIFLDIA CFFRGMDKGF VTKILESCGF YPHSGLRVLI DRALVIISDD 480 NRLEMHDLIK DMGWEIIRQQ SIKEPGKRSR LWVYEDVARV LTQNMATDAV ECIMLDLSKS 540 KDVYIDAEAF VRMTKLRLLR IGYNHSIDLN AKDFQSKQLH HPRGECKQHV SGDVKFLSHD 600 LRYLMWYGCP LKSLPSNFHP KNLVDLDMRC SHIEHLWAEI KSFKKLKFIN LSHSYYLTTT 660 PNFTEATNVE TLVLEGCSSL LDVNSSISAL KNLVFLCLRG CKELKSLPSS ICLKSLKTLD 720 LSGCSSLAKF PEISGIMEDL SEIYLNDTAI EELPSSIERL QGLVLLHLRN CRSLLCLPDT 780 ICNLVYLKDL TVSGCSKLYH LPENLGNLES LMCLEVEGSG IRELPVSILC LKRLKTLSCD 840 GCTEMTMPFS SWSSSIEEYC SYSGLLHLDL SDSNLCELSD GIAQLSSLKT LELRGTNLES 900 LPATMNQLRC LTRLELEACK RLKSVPELPS TINYIDAHDC SALATVAKPN TRCSMNLCFT 960 FSNCLQMVQT NLFRDIVETH SSYQGNYQRP LSFNMSLPGS EIPDWFNYQC RGSSLTVQLP 1020 PNWFDNKFLG FAICAVSDFK VSHNDASDLS ALCHCGLKGN HGQYSFSFTL LDWGFTTERI 1080 LESDHMFLAY VPWSEYRFIV EGKLVNERYF TEATFEIVVE NRADSHVFGT VKNHHCITSC 1140 GVRFFHSSCM EEQNLNISET KSHHDSCDSR RGKEGVGVQL EVNPALVILP EEAFSRCEWS 1200 PKADQSSIST SEVSMEDQRN SYKRRKNSES WTGVSPTVED GQAWKTFGQK EIPNAPYPRE 1260 GLARWSQQVR VTPDIRLDEG SLDDGFSWRK YGQKDILGAK YPRGYYRCTN RNIQGCLATK 1320 QVQRADEDPM IVKITYQGRH TCTQAASVTV NSPPA

Sequence ? help Back to Top

Protein Sequence Length: 1355 aa Download sequence

MAASSSLSSG GRWNYDVFLS FRGQDTRKIF VGHLHKALDL KAINAFIDSE DLCKGNDLSE  60
LLRAIEDSRL SIVVFSQNYA SSTWCLKELV KILECVAAKK QVVVPIFYEV DPSDIRKLKG  120
SFAEAFARHE QDYNANMEEV NRWKIALTEA TNLSGWDSRN YKDDAKFIEK IVEDISEKFV  180
HISSNKVNDL VGMDSHVEKM CSLLCLGGDD VRVVGVCGMP GIGKTTIAKA VYDKLLCQFE  240
HYCFLENVKD GFKNNGAIHM QEELLSRIFE KRVRCLGTLS KGSKMIMERL SKKKVLLVLD  300
DVENFAQIEA LLGNQHSFGG GSRIIVTTRD IQSLSGVDAR YSPMFLSDDE ALELFMQYAF  360
RTNQPTREYD PLSRRAVEYA QGLPLALKVL GAFLDDKSIC EWEDELEKIK EIPHIEIQGV  420
LKKSFDGLDP SQKDIFLDIA CFFRGMDKGF VTKILESCGF YPHSGLRVLI DRALVIISDD  480
NRLEMHDLIK DMGWEIIRQQ SIKEPGKRSR LWVYEDVARV LTQNMATDAV ECIMLDLSKS  540
KDVYIDAEAF VRMTKLRLLR IGYNHSIDLN AKDFQSKQLH HPRGECKQHV SGDVKFLSHD  600
LRYLMWYGCP LKSLPSNFHP KNLVDLDMRC SHIEHLWAEI KSFKKLKFIN LSHSYYLTTT  660
PNFTEATNVE TLVLEGCSSL LDVNSSISAL KNLVFLCLRG CKELKSLPSS ICLKSLKTLD  720
LSGCSSLAKF PEISGIMEDL SEIYLNDTAI EELPSSIERL QGLVLLHLRN CRSLLCLPDT  780
ICNLVYLKDL TVSGCSKLYH LPENLGNLES LMCLEVEGSG IRELPVSILC LKRLKTLSCD  840
GCTEMTMPFS SWSSSIEEYC SYSGLLHLDL SDSNLCELSD GIAQLSSLKT LELRGTNLES  900
LPATMNQLRC LTRLELEACK RLKSVPELPS TINYIDAHDC SALATVAKPN TRCSMNLCFT  960
FSNCLQMVQT NLFRDIVETH SSYQGNYQRP LSFNMSLPGS EIPDWFNYQC RGSSLTVQLP  1020
PNWFDNKFLG FAICAVSDFK VSHNDASDLS ALCHCGLKGN HGQYSFSFTL LDWGFTTERI  1080
LESDHMFLAY VPWSEYRFIV EGKLVNERYF TEATFEIVVE NRADSHVFGT VKNHHCITSC  1140
GVRFFHSSCM EEQNLNISET KSHHDSCDSR RGKEGVGVQL EVNPALVILP EEAFSRCEWS  1200
PKADQSSIST SEVSMEDQRN SYKRRKNSES WTGVSPTVED GQAWKTFGQK EIPNAPYPRE  1260
GLARWSQQVR VTPDIRLDEG SLDDGFSWRK YGQKDILGAK YPRGYYRCTN RNIQGCLATK  1320
QVQRADEDPM IVKITYQGRH TCTQAASVTV NSPPA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	1e-107	WRKY family protein