PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0370681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 19638.1 Da PI: 7.5016 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.7 | 1.1e-39 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk+l+r+C++ C++ap+f +++p+kfa vhk+FGasnv+k+l+++pee+red++ssl+yeAear+rdPvyG++g i lq ++ RcHm_v2.0_Chr1g0370681 12 SCAACKLLKRRCVPTCIFAPHFRSDEPSKFAKVHKVFGASNVSKILSEVPEEQREDTVSSLAYEAEARLRDPVYGCIGAIAMLQGKM 98 6************************************************************************************** PP DUF260 88 eqlkaelallkee 100 +l+++la ++++ RcHm_v2.0_Chr1g0370681 99 VELQHDLAIARAR 111 *******999875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence |
MKGTHEPRSS SSCAACKLLK RRCVPTCIFA PHFRSDEPSK FAKVHKVFGA SNVSKILSEV 60 PEEQREDTVS SLAYEAEARL RDPVYGCIGA IAMLQGKMVE LQHDLAIARA RLACYGHPSS 120 SSVSSSSSAS SYTMLEDHLT EANFAGLPAF SGFNNAFSQS STEFMSQHGT NSGFSYPPYI 180 L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 8e-64 | LBD family protein |