PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0370671 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | Trihelix | ||||||||
Protein Properties | Length: 338aa MW: 38110.8 Da PI: 10.0839 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 42.7 | 1.5e-13 | 120 | 202 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +W+++ + +Li+a ++ rl+rg+l++++W+ev++ + r++ + ++ qCk++++ l+k+yk +k st+ ++d+ RcHm_v2.0_Chr1g0370671 120 CWSDDATSVLITAWGDRYLRLNRGNLRQKDWKEVADSVnsrRDGAVFKTDGQCKNRIDTLKKKYKLEKSKPFP------STWIFYDS 200 7**************************************98888999******************98865543......56777777 PP trihelix 85 le 86 l+ RcHm_v2.0_Chr1g0370671 201 LD 202 65 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence |
MKIFTLLISK RANFENEMKQ PSTQCRTCVL EAKQFHMVKL EQLVVCPNPN RKPDVTAGRI 60 HGQISIPFPS PILFPISHPL PYNTSRFHSN SPTLSLSLST RTRPMERPTR PYAPGGREDC 120 WSDDATSVLI TAWGDRYLRL NRGNLRQKDW KEVADSVNSR RDGAVFKTDG QCKNRIDTLK 180 KKYKLEKSKP FPSTWIFYDS LDSLIGVPSS NAAALTRPPK PLTLALTLKS AADPSPLGFR 240 RCGSTESDGE DDVEGGGVGL AGGAACRELA RAILKFGEIY ERMESSKQEQ MVELEKQRMA 300 FTKELEVQRL NMFMDAQLEL EKMKKRPKYS KHSSGKKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 3e-33 | Trihelix family protein |