PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0370671
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 338aa    MW: 38110.8 Da    PI: 10.0839
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0370671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.71.5e-13120202186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                             +W+++ + +Li+a  ++  rl+rg+l++++W+ev++ +   r++ + ++  qCk++++ l+k+yk +k           st+ ++d+
  RcHm_v2.0_Chr1g0370671 120 CWSDDATSVLITAWGDRYLRLNRGNLRQKDWKEVADSVnsrRDGAVFKTDGQCKNRIDTLKKKYKLEKSKPFP------STWIFYDS 200
                             7**************************************98888999******************98865543......56777777 PP

                trihelix  85 le 86 
                             l+
  RcHm_v2.0_Chr1g0370671 201 LD 202
                             65 PP

Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MKIFTLLISK RANFENEMKQ PSTQCRTCVL EAKQFHMVKL EQLVVCPNPN RKPDVTAGRI  60
HGQISIPFPS PILFPISHPL PYNTSRFHSN SPTLSLSLST RTRPMERPTR PYAPGGREDC  120
WSDDATSVLI TAWGDRYLRL NRGNLRQKDW KEVADSVNSR RDGAVFKTDG QCKNRIDTLK  180
KKYKLEKSKP FPSTWIFYDS LDSLIGVPSS NAAALTRPPK PLTLALTLKS AADPSPLGFR  240
RCGSTESDGE DDVEGGGVGL AGGAACRELA RAILKFGEIY ERMESSKQEQ MVELEKQRMA  300
FTKELEVQRL NMFMDAQLEL EKMKKRPKYS KHSSGKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.13e-33Trihelix family protein