PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr1g0369521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 183aa MW: 20915.6 Da PI: 9.2227 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.5 | 7.5e-21 | 27 | 88 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L +lF++ r+ps++++++++++l +++ ++V++WFqN++a+e++ RcHm_v2.0_Chr1g0369521 27 KCGRWNPTTEQVKVLTDLFRSgLRTPSTDQIQKISTQLsfygKIESKNVFYWFQNHKARERQ 88 568*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.5 | 5.3e-37 | 27 | 90 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++ RW+Pt+eQ+k+L++l++sGlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+ RcHm_v2.0_Chr1g0369521 27 KCGRWNPTTEQVKVLTDLFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKR 90 578***********************************************************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence |
MDENMSGFCI KSIRGGGGGG GNGGNNKCGR WNPTTEQVKV LTDLFRSGLR TPSTDQIQKI 60 STQLSFYGKI ESKNVFYWFQ NHKARERQKR RKVSIDIDKE FIRRDHDKIS SPKEVLNQVS 120 SEPARVIETL QLFPINSFDE SGAEKLRFYA NEFCCKENTR GFTYTVGAEM DHHPPLDLRL 180 SFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G11260.1 | 4e-64 | WOX family protein |