PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0368101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | LBD | ||||||||
Protein Properties | Length: 97aa MW: 10759.5 Da PI: 8.4966 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.3 | 7.7e-36 | 7 | 95 | 1 | 88 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aC++lrrkC+++Cv+apyf+ +q + +f +vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v+ i++lqqq+ RcHm_v2.0_Chr1g0368101 7 SCGACRFLRRKCTSECVFAPYFCYDQaATHFSAVHKVFGASNVSKLLLHLPVQHRSDAALTMSYEAIARMRDPIYGCVSQIFALQQQVT 95 6************************9789**********************************************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence |
MTGLGSSCGA CRFLRRKCTS ECVFAPYFCY DQAATHFSAV HKVFGASNVS KLLLHLPVQH 60 RSDAALTMSY EAIARMRDPI YGCVSQIFAL QQQVTFC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-49 | LBD family protein |