PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0367811
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 733aa    MW: 82049 Da    PI: 6.2853
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0367811genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS385.27.4e-1183607311374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lL+ cA+a+++gd +  + lL+r++++asp gd mqR+a +f+ +L+arla+s++++y+al +++ts    +++l+a++lf  +
  RcHm_v2.0_Chr1g0367811 360 LRTLLTVCAQAIAAGDERTGNDLLKRIRQHASPVGDGMQRMACCFADGLEARLAGSGTQIYRALITKPTS---AADVLKAYHLFLAA 443
                             5789***************************************************************999...9************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P+ k+s++  N++I++  e+++r+HiiDf+i++G+QWp+L+q L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae++
  RcHm_v2.0_Chr1g0367811 444 CPFKKLSNFFSNKTIMNVSEKATRLHIIDFGIMYGFQWPCLIQRLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGRRLANYAETF 530
                             *****************************************************************9********************* PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfefn+ +a++++++++e+L+++++E+l+Vn++++l +llde+v +es+rd vL+l+++++P+v ++   +  ++++ Fl rf e
  RcHm_v2.0_Chr1g0367811 531 KVPFEFNA-IAQKWDTIQIEDLKLDRDEVLVVNSIYRLRNLLDETVVVESPRDIVLNLIRKMNPDVYILGVVNGAYSAPFFLSRFRE 616
                             ********.7***************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++s+lfd+l++ +pr+  er+ +Ere++gre++nv+aceg+er+er et+++W+ r ++aG++++pl++++++ ak  l+ ++ 
  RcHm_v2.0_Chr1g0367811 617 ALFHFSTLFDMLDMCVPRDIPERMLIEREIFGREAMNVIACEGSERIERPETYKQWQVRNRRAGLTQLPLNQEIMSIAKDRLHAYYH 703
                             **************************************************************************************8 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                             + + ++e+  +l++gWk+r ++++S+Wr
  RcHm_v2.0_Chr1g0367811 704 KDFVIDEDGRWLLQGWKGRIVYALSSWR 731
                             88*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    
MVMDQALSEL LEFRDQALSD SMYKKLDSGI GNGSGSSKVL GHKYATTVRV PPTQIPSDLA  60
PHLSMNSDGD SQEDCDFSDV VLKYISQMLM EEDMEEKTCM YQESAALHAA EQSFYELIGE  120
KHPLPRDLTL AADQNHESPD ESHSLHSSCC STTSTSTSSS IRDCDLREFK SLNVASQSSH  180
ASSHGTSNIV DGFVDSPVST LRVPDFFNET DSIMQFKKGF EEASKFLPNG NSLIVDLESN  240
TLLLKELKAD ATDMLVKVDQ KNDSEYSSAG SRRKKHSYHD DVLLEGERSN KQSSVSTESA  300
VSPEMFDMVL LNCGQGESAL REALQNGTKK NKPQNGQSKG LSGGKSRGKK QGGKKDVVDL  360
RTLLTVCAQA IAAGDERTGN DLLKRIRQHA SPVGDGMQRM ACCFADGLEA RLAGSGTQIY  420
RALITKPTSA ADVLKAYHLF LAACPFKKLS NFFSNKTIMN VSEKATRLHI IDFGIMYGFQ  480
WPCLIQRLSS RPGGPPKLRI TGIDFPNPGF RPAERVEETG RRLANYAETF KVPFEFNAIA  540
QKWDTIQIED LKLDRDEVLV VNSIYRLRNL LDETVVVESP RDIVLNLIRK MNPDVYILGV  600
VNGAYSAPFF LSRFREALFH FSTLFDMLDM CVPRDIPERM LIEREIFGRE AMNVIACEGS  660
ERIERPETYK QWQVRNRRAG LTQLPLNQEI MSIAKDRLHA YYHKDFVIDE DGRWLLQGWK  720
GRIVYALSSW RAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein