PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0363841

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 1705aa MW: 185873 Da PI: 6.3858

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0363841	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.1e-09	802	844	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e +++ +G++ +k+Ia+ + ++t +c+++++k+ RcHm_v2.0_Chr1g0363841 802 PWTPEEKEAFIEKLVVFGKD-FKKIASFFD-HKTTADCVEFYYKH 844 8***************99.*****.**********97 PP
2	Myb_DNA-binding	33.6	9e-11	1017	1057	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++ +R+ +qck ++ RcHm_v2.0_Chr1g0363841 1017 DWTDEEKSSFIQAVSSHGKD-FAMISRCVR-TRSQNQCKVFFS 1057 6***************99.*****.******8876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1705 aa Download sequence
MPPEPLSWDR KEFLKERKHE RSESLGPVAR WRDSPHHAPR EFNNRWQSAE FRRPPGHGKQ 60 GGWHMFSDDS GHGYASSRSN EKMLEDESFR PSFSRGEGRY GRNGRDSRGS YNQRDCKGHS 120 WETSSLSPNT PGRPNDMNNE QRPQDDNMTY SSNPHSDFGS TWDQIQLKDH LDRTGGSNGI 180 AAGQKCDKEN SLGSMDWRHL KWSRSGSMSS RGSGFSHSSS SKSIGAIDSS EAKTESQPKN 240 ATPVQSPSGD ATACVTSAAP SEETNSRKKP RLGWGEGLAK YEKKKVDPAD VIMNKDGAVC 300 PVGNMEPVQS FSSHLADKSP RVTMLSDCAS PATPSSVACS SSPGVEEKPF GKAAGVDNDS 360 NLYRSPGPEL QSHQEGFSFK LEKLDYNSLA NVTSSLHELL QSDDPSPMDS STMRPTAMNK 420 LLIWKGDISK VLEVTESEID LLENKLKILN SDSRDSCAAA SSSLPVEESD KSGKEHATAK 480 NLITRPAPLQ IFSSEDTDPQ KLALGNGEQG ESCGVKDQDM DSPGTATSKF VEQLPLLKVA 540 SSDMGNPSGC AENQDLVQTA ERDVECLVAG KDEEKSDLSV HGNSRMLLVS EIVTPVSDGL 600 DLCAGVVDTL CDSIFSSNKE SANRASDIFN KLLPKDNCGV DISGLGISSS WKNDSLIKEK 660 FKARKRRLRF MERVITLKYK AHQQLWKEDV RLFSERKYRP KSHKKCDLGL RNTTNGNQKH 720 RSSIRSRFST PAGNLSLVPT KEVEKFANKV LCDSQVKLYR NSLKMPALIL DKKEKIVTRF 780 VSSNGLVEDP CAVEKERALI NPWTPEEKEA FIEKLVVFGK DFKKIASFFD HKTTADCVEF 840 YYKHHKSVAF QKAKKKPDIS KLGKSSANTY MINPGTKWNR EVNAASLDIL GAASVMAAQA 900 DGSTRNRTGR LILGGYKNMK ISQSEDVTVE RSCTFDVIGN ERETAAADVL AGICGSLSSE 960 AVSSCITSSI DPGDGCREWK CQKVDSLVRR PLTPDVMQSV DDETCSDESC GEMDPSDWTD 1020 EEKSSFIQAV SSHGKDFAMI SRCVRTRSQN QCKVFFSKAR KCLGLDLVHP RRGNEGASIV 1080 DDANGGGSDT EDACVVETGS GISIDKSGCE MNEDLPLSVM DMDHEDSDPE ETINLKCDPL 1140 GSVENNVKGE VDHLDNKALK SSDALQMEDR PEVVFNDVTN IMDVGDRLSE SVPAQRSEAF 1200 SADADAVRDN VAEKRSLVAE SLIGEGISSD LPKLEGQGER CNTDTSGCGL QVSANDSNSS 1260 GSASDMAAEG SCSGLAAECL HQVSVELNSM QKSSVNSLSH ENLLATAISV PENSAVVEYG 1320 KAINQDRLSS TSDLQEGRDK QSLSVGGDDC HKHLPGLPVL TNIDPAHVLR GYPLHMATKK 1380 GINGHISSGN LSEVRNLSKP DGPKDCLLQF GNCKPRSSQD FPLVHQKIER RTDTTKAHSW 1440 SSSDTDKPSR NGDVKLFGKI LTNTSKSSSS IQENEEKGSN IHNLSNKSSN LKFSGHHNLD 1500 GNSGVLKFDS SNYAGLENVP RRSYSFWEGN KVQNGHPSFP DSAILLAKYP AAFGNFPTSS 1560 SKLEQKPLQA VRNNEGHVNG ASVFPSREIS SSSSSGIVDY HQVFSRHRDG GAKVPPFTVD 1620 VKQRQDIFDV SRRNGFESSL QQQGRGIAGM NVVGRGGIMV GGPCTGVSDP VAAIRMHYAK 1680 TEQYGGQGSI IREEESWRGK GDIGR

Sequence ? help Back to Top

Protein Sequence Length: 1705 aa Download sequence

MPPEPLSWDR KEFLKERKHE RSESLGPVAR WRDSPHHAPR EFNNRWQSAE FRRPPGHGKQ  60
GGWHMFSDDS GHGYASSRSN EKMLEDESFR PSFSRGEGRY GRNGRDSRGS YNQRDCKGHS  120
WETSSLSPNT PGRPNDMNNE QRPQDDNMTY SSNPHSDFGS TWDQIQLKDH LDRTGGSNGI  180
AAGQKCDKEN SLGSMDWRHL KWSRSGSMSS RGSGFSHSSS SKSIGAIDSS EAKTESQPKN  240
ATPVQSPSGD ATACVTSAAP SEETNSRKKP RLGWGEGLAK YEKKKVDPAD VIMNKDGAVC  300
PVGNMEPVQS FSSHLADKSP RVTMLSDCAS PATPSSVACS SSPGVEEKPF GKAAGVDNDS  360
NLYRSPGPEL QSHQEGFSFK LEKLDYNSLA NVTSSLHELL QSDDPSPMDS STMRPTAMNK  420
LLIWKGDISK VLEVTESEID LLENKLKILN SDSRDSCAAA SSSLPVEESD KSGKEHATAK  480
NLITRPAPLQ IFSSEDTDPQ KLALGNGEQG ESCGVKDQDM DSPGTATSKF VEQLPLLKVA  540
SSDMGNPSGC AENQDLVQTA ERDVECLVAG KDEEKSDLSV HGNSRMLLVS EIVTPVSDGL  600
DLCAGVVDTL CDSIFSSNKE SANRASDIFN KLLPKDNCGV DISGLGISSS WKNDSLIKEK  660
FKARKRRLRF MERVITLKYK AHQQLWKEDV RLFSERKYRP KSHKKCDLGL RNTTNGNQKH  720
RSSIRSRFST PAGNLSLVPT KEVEKFANKV LCDSQVKLYR NSLKMPALIL DKKEKIVTRF  780
VSSNGLVEDP CAVEKERALI NPWTPEEKEA FIEKLVVFGK DFKKIASFFD HKTTADCVEF  840
YYKHHKSVAF QKAKKKPDIS KLGKSSANTY MINPGTKWNR EVNAASLDIL GAASVMAAQA  900
DGSTRNRTGR LILGGYKNMK ISQSEDVTVE RSCTFDVIGN ERETAAADVL AGICGSLSSE  960
AVSSCITSSI DPGDGCREWK CQKVDSLVRR PLTPDVMQSV DDETCSDESC GEMDPSDWTD  1020
EEKSSFIQAV SSHGKDFAMI SRCVRTRSQN QCKVFFSKAR KCLGLDLVHP RRGNEGASIV  1080
DDANGGGSDT EDACVVETGS GISIDKSGCE MNEDLPLSVM DMDHEDSDPE ETINLKCDPL  1140
GSVENNVKGE VDHLDNKALK SSDALQMEDR PEVVFNDVTN IMDVGDRLSE SVPAQRSEAF  1200
SADADAVRDN VAEKRSLVAE SLIGEGISSD LPKLEGQGER CNTDTSGCGL QVSANDSNSS  1260
GSASDMAAEG SCSGLAAECL HQVSVELNSM QKSSVNSLSH ENLLATAISV PENSAVVEYG  1320
KAINQDRLSS TSDLQEGRDK QSLSVGGDDC HKHLPGLPVL TNIDPAHVLR GYPLHMATKK  1380
GINGHISSGN LSEVRNLSKP DGPKDCLLQF GNCKPRSSQD FPLVHQKIER RTDTTKAHSW  1440
SSSDTDKPSR NGDVKLFGKI LTNTSKSSSS IQENEEKGSN IHNLSNKSSN LKFSGHHNLD  1500
GNSGVLKFDS SNYAGLENVP RRSYSFWEGN KVQNGHPSFP DSAILLAKYP AAFGNFPTSS  1560
SKLEQKPLQA VRNNEGHVNG ASVFPSREIS SSSSSGIVDY HQVFSRHRDG GAKVPPFTVD  1620
VKQRQDIFDV SRRNGFESSL QQQGRGIAGM NVVGRGGIMV GGPCTGVSDP VAAIRMHYAK  1680
TEQYGGQGSI IREEESWRGK GDIGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein