PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0363241
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 625aa    MW: 69009.3 Da    PI: 7.2247
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0363241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.3e-23127228199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++
  RcHm_v2.0_Chr1g0363241 127 FAKTLTQSDANNGGGFSVPRFCAETIfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNNKKLVAGDSI 211
                             89*********************999****986445444..8999****************************************** PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             vF   + +++ l+v+++r+
  RcHm_v2.0_Chr1g0363241 212 VFF--RAENGDLCVGIRRA 228
                             ***..3488889****996 PP
2Auxin_resp1081e-35288370183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             aa+ a ++++FevvY+Prast+eF+vk+++v++a++++++ G Rfkm fetedss++++ +Gt+++v+++dp rWp+S+Wr L+
  RcHm_v2.0_Chr1g0363241 288 AATLAVSGQPFEVVYYPRASTPEFCVKASSVRAAMQIRWCSGIRFKMPFETEDSSRISWfMGTISSVHHADP-RWPDSPWRILQ 370
                             6788999*****************************************************************.*********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    
MITIMNSVRE PMKNNSNNSE KGLDSQFWHA CAGGMVQMPP INSKVFYFPQ GHAEYAQGDV  60
DFGNSRIPAL ILSRISAIRY MADPETDEVY AKMRLVPVRE SGFDFEDDGV VGNNNGVVEN  120
PEKPTSFAKT LTQSDANNGG GFSVPRFCAE TIFPRLDYSA EPPVQTILAK DVHGEIWKFR  180
HIYRGTPRRH LLTTGWSNFV NNKKLVAGDS IVFFRAENGD LCVGIRRAKR GIGGGPEYPC  240
GWNTPSGNPS SQYGGYSGFS RENGNKSMEK NSSGTTRGRV RAEHVIEAAT LAVSGQPFEV  300
VYYPRASTPE FCVKASSVRA AMQIRWCSGI RFKMPFETED SSRISWFMGT ISSVHHADPR  360
WPDSPWRILQ VAWDEPDLLQ NVRCVSPWLV ELVSSIPAID LSPYSPPRKK LRLQQYPDYS  420
LIGQLPMPSV YGNFLNSSNT LCHLSDNIPA GIQGARQAHF GLSSSNLFNK RHSGLIPVGF  480
QQLGHVLIVS GQQMSKSSSG DDSSSDPEKT GNSSDGSGSA LHRNGSVENC SDGGSPWDKD  540
HQKSDHNLET SLCKVYVESG DAGTLDLSVF RSYQELYRKL ANMFGKENSE MLSNVLYRDA  600
TGAVRHTGDE PFSEFLKTAR GLYMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein