PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0361701
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 467aa    MW: 53165.8 Da    PI: 6.1166
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0361701genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.81.5e-38191461127
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyat.gkrknratksgyWk 84 
                             lp+G+rFhPt+eelv+++Lk+k++g  +++   ++evdi+k+ePwdLp+   ++++++ew++Fs+ d k+ + + ++nrat+ g+Wk
  RcHm_v2.0_Chr1g0361701  19 LPVGYRFHPTEEELVDHFLKNKMQGCAFDE---VPEVDICKHEPWDLPAfsPLRSDDEEWFYFSRPDYKAGKkQGQANRATEGGFWK 102
                             799**********************99777...9**************4456778999********99998626699********** PP

                     NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                              t k+ ++ ++ +++++g k++L+fy+g+ ++g+kt+W +hey 
  RcHm_v2.0_Chr1g0361701 103 ITAKEGTIRARrSKAVIGKKRILTFYTGKVRSGQKTSWGIHEYY 146
                             *********98566679**************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    
MAASSSRHRV GYRFDPRELP VGYRFHPTEE ELVDHFLKNK MQGCAFDEVP EVDICKHEPW  60
DLPAFSPLRS DDEEWFYFSR PDYKAGKKQG QANRATEGGF WKITAKEGTI RARRSKAVIG  120
KKRILTFYTG KVRSGQKTSW GIHEYYIPEN LLPNAARQRD FVLCRLKKKD ESTNIGACDE  180
GEPSTNNASD FQNLMEVFGR QSIPEDLQIT LQENTRRPEE IFDTLFPSPE SPQLHNFSSM  240
LGDNFLHANA VSDVHLELQY GFQPDDSEDE EFNVNSYLVD DGDYSLEETS RTTRLNHSSE  300
PKSVVKVYDE GIHQQSMSSP VASSLPIRDA NVMLLKFSQK NASPVNVAAN LPRKELQADF  360
GSHMLSHLGP QEVKYTSKLS EMPKPKPEPP TPKPKPVEPP SNDEGKGMKQ KQTGTTISDW  420
KSSFIVWKES PLILRSYPPA VYTCYMIGGL VLFIFFVEEL ISYGKWY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-38NAC family protein