PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0361661

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 415aa MW: 47229.5 Da PI: 5.4506

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0361661	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	34.7	5.1e-11	9	56	2	49
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 pp +rF+Pt +el++++L+kk + k+ + ++i+ +d++k+eP++Lp RcHm_v2.0_Chr1g0361661 9 PPEYRFRPTKKELLCDHLEKKNQCKDSQSMSIIPVIDLCKHEPRELPG 56 7889********************999999************94 PP
2	NAM	64.1	4.3e-20	113	188	54	127
NAM 54 eekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 ++ +wyfF++rd ky++ ++r+nr+t +g Wk tgkdk++++ +++++g k++L+f k pk++k+ Wv+hey RcHm_v2.0_Chr1g0361661 113 SQGKWYFFAPRDYKYPNsSTRSNRTTGEGSWKVTGKDKDIKAPgSEAVIGRKRILTFQKRGVPKSHKSGWVIHEYY 188 3459**********8578******************9666779***********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MSCEIFSIPP EYRFRPTKKE LLCDHLEKKN QCKDSQSMSI IPVIDLCKHE PRELPGDPSP 60 EPEHHQFQLL LVIQSCVLCC VFAGLAFTGQ ENLGRKLFFF FFFWFTRAES WDSQGKWYFF 120 APRDYKYPNS STRSNRTTGE GSWKVTGKDK DIKAPGSEAV IGRKRILTFQ KRGVPKSHKS 180 GWVIHEYYHI QPHSDPSKQI GDFVVCCLKY KSDNSDHDED APFCNRGSGS GSCSMVSDVA 240 NQLVEENLAS NEQFNGTNNE AETGGGTITE AEEYLAYKKL RDELRIPIGN QNEFQGSQTD 300 PCNLWTSVEG QADRSNSSHH MTEERLDDPE NMDSFFRTPA PPQLHQLHQS PMNTTNVHND 360 ECCKRKYPFE DNDSSLTKKN NISSNDGDEL VSNTTSNFEN QAADVILEVR ICMLF

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MSCEIFSIPP EYRFRPTKKE LLCDHLEKKN QCKDSQSMSI IPVIDLCKHE PRELPGDPSP  60
EPEHHQFQLL LVIQSCVLCC VFAGLAFTGQ ENLGRKLFFF FFFWFTRAES WDSQGKWYFF  120
APRDYKYPNS STRSNRTTGE GSWKVTGKDK DIKAPGSEAV IGRKRILTFQ KRGVPKSHKS  180
GWVIHEYYHI QPHSDPSKQI GDFVVCCLKY KSDNSDHDED APFCNRGSGS GSCSMVSDVA  240
NQLVEENLAS NEQFNGTNNE AETGGGTITE AEEYLAYKKL RDELRIPIGN QNEFQGSQTD  300
PCNLWTSVEG QADRSNSSHH MTEERLDDPE NMDSFFRTPA PPQLHQLHQS PMNTTNVHND  360
ECCKRKYPFE DNDSSLTKKN NISSNDGDEL VSNTTSNFEN QAADVILEVR ICMLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.3	3e-27	NAC family protein