PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0361631
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 303aa    MW: 34312.3 Da    PI: 4.9302
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0361631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.27.6e-41111441128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                             +p G+rFhPt+eelv++yLkkk++g +  e++++i+e+d++k+eP +Lp+    +++a++ ew+fF++++ ky++++r++r+t++gy
  RcHm_v2.0_Chr1g0361631  11 VPIGYRFHPTEEELVNHYLKKKIHGGNdSEINQIIPEIDLCKYEPAELPAllgtETEAHDMEWFFFTRKAYKYNKSSRSKRSTNKGY 97 
                             589********************99985677778***************656666666788************************** PP

                     NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             Wk tg ++ ++++ +++++  k+tL+fy+gr p+++kt+ v+hey+l
  RcHm_v2.0_Chr1g0361631  98 WKITGPERGIKARrSKAVIAKKRTLTFYQGRVPTSKKTSCVIHEYNL 144
                             ***********994555688899**********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MSRENTTPLS VPIGYRFHPT EEELVNHYLK KKIHGGNDSE INQIIPEIDL CKYEPAELPA  60
LLGTETEAHD MEWFFFTRKA YKYNKSSRSK RSTNKGYWKI TGPERGIKAR RSKAVIAKKR  120
TLTFYQGRVP TSKKTSCVIH EYNLPGNGII PYPKQAQGDY VICRLKITDK KDSSVSNEEE  180
PGSASLSEMN QEGNEDLLLH QPQPLDDCCS SALRSPVSQE LEAVLQTNGT NDDCNELQSP  240
FGDSDFCVED GNEVSTCDEC ETVYDVFPQF RDLPEQNLDS LFGPHQPQEY CPSILQSPIY  300
TKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.17e-36NAC family protein