PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0361371
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 373aa    MW: 43491.3 Da    PI: 7.5438
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0361371genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.59.7e-3281183199
                             EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F+
  RcHm_v2.0_Chr1g0361371  81 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFQDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFE 167
                             89***************************966778999************************************************* PP

                             E-SSSEE..EEEEE-S CS
                      B3  84 ldgrsefelvvkvfrk 99 
                             ++ r++  l++ + r+
  RcHm_v2.0_Chr1g0361371 168 RSVRDSNVLYIDWKRR 183
                             8877777677777665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MEYFVQGDQK GYSDKEEDQE EEEDKNHIIN SKYLSPSYNY GSSSSSSQTP EAINFMDLSL  60
RNAKDNNNND WPPNSEREHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD SSTNEKGLLL  120
NFQDRTGKPW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA GDIVSFERSV RDSNVLYIDW  180
KRRPPPPLPP NQTSLWGGGG RFYSLQRPPL MSMPLRHHEH FHYNIHHPYH HQYQYHQMNP  240
YQLQQQQQQQ QYYHHRGISP AVVIDSVPLV QHHHHHHGKN MSPTTNKRLR LFGVNMEYSP  300
MQEDEPEQCQ ILSSTVASLS PHQHHHHHHL PSSSLSQPLE LRLPNYAAPL AGSADQLLSE  360
KGKSTSLSFY LDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.18e-65B3 family protein