PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0360751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 243aa MW: 28155 Da PI: 4.9206 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.9e-19 | 39 | 93 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +f++eq++ Le+ Fe+++ + +++ +LAk+lgL+ rqV +WFqN+Ra++k RcHm_v2.0_Chr1g0360751 39 NNKKRFSDEQIRSLESIFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 93 56788*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.5 | 2e-39 | 40 | 131 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +k+r+s+eq+++LE+ Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+++L RcHm_v2.0_Chr1g0360751 40 NKKRFSDEQIRSLESIFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSILRANYNNLASRFEALKKEKQALV 126 79************************************************************************************* PP HD-ZIP_I/II 89 eelke 93 ++l++ RcHm_v2.0_Chr1g0360751 127 TQLQK 131 *9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MLEVDRVGYS PSPEEAEAFS YMNDSLGAGS SLKKNRSKNN KKRFSDEQIR SLESIFESES 60 RLEPRKKLQL AKELGLQPRQ VAIWFQNKRA RWKSKQLERD YSILRANYNN LASRFEALKK 120 EKQALVTQLQ KLNDKMQRPK EERNNSIDGE SDNGDDATRS ESEGKPNYQM SLEKSEHRLR 180 VMSDDDSSIK AEYFGLEEEP NLVNFVESAD GSLTSPEDWG RLNSDGGLFD QSTSDYQWWD 240 FWS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 39 | KKNRSKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-71 | HD-ZIP family protein |