PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0360081
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 344aa    MW: 38784.6 Da    PI: 6.382
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0360081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.9e-16101149153
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                             ++ykGVr++k +g +vAeIrd +     r +r +lg++ taeeAa a+ + r ++
  RcHm_v2.0_Chr1g0360081 101 TKYKGVRRRK-WGTYVAEIRDpF-----RkTRLWLGTYTTAEEAAMAYQKKRVEF 149
                             69*****998.**********77.....45******************9988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MKRENLKMKQ PSKDQNTSST KRIRIIYDDP YATDCSSEDD EEYNIKKNRS VRNKRIVSEI  60
LVGGTPCESS AKTSFNCNTY GTKFGTSMDF DDSKETRRCA TKYKGVRRRK WGTYVAEIRD  120
PFRKTRLWLG TYTTAEEAAM AYQKKRVEFD NIKLLQKTKS NLEKLQLSDK AKGMCETKHN  180
YQGNHLSESQ DLSADAAIET VSYEDTKSVF SHPSPSSVLD ISSTAAQNFG LRKSDEESTL  240
EVSGREGPVP LDSEEEQYNL KAPEKPTLLP PVHLNIGFVD NYMLECLDRY FDGMTDIVDH  300
PACDDVNGLF LPAVVRPMLD SFEASKQVPQ PALSDVVAGM TGKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110KGVRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.12e-19ERF family protein