PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0360041
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 686aa    MW: 76057 Da    PI: 7.0097
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0360041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-23129229198
                             EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                             f+k+lt sd++++g +++ +k+a+++     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF
  RcHm_v2.0_Chr1g0360041 129 FCKILTASDTSTHGGFSVLRKHANDClppldMNQATPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVF 215
                             99*********************999****9555556679*********************************************** PP

                             EE-SSSEE..EEEEE- CS
                      B3  83 kldgrsefelvvkvfr 98 
                              +    ++el+v+v+r
  RcHm_v2.0_Chr1g0360041 216 LR--GGNGELRVGVRR 229
                             *4..378899****98 PP
2Auxin_resp104.99.7e-35255334183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+ha+ t++ F v+Y+Pr+  s+F+v ++k+++a+++k+svGmRfkm+fe+eds+err++Gt+vgv dl+p +W++SkWrsLk
  RcHm_v2.0_Chr1g0360041 255 ASHAVMTSTLFVVYYKPRT--SQFIVGLNKYLEAINNKFSVGMRFKMRFEGEDSPERRFTGTIVGVGDLSP-HWSESKWRSLK 334
                             6899**************6..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    
MAHSECESSS ISRATADTGF GGALYTELWK LCAGPLVDVP SPGERVFYFP QGHMEQLEAS  60
TNQELNPQIP RFNIPSKILC RVVNIQLLAE RETDEVYAQI TLHPESDQSE PTSPDPCVPE  120
PPKPATYSFC KILTASDTST HGGFSVLRKH ANDCLPPLDM NQATPTQELV AKDLHGYEWK  180
FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGGN GELRVGVRRL ARQQTPMPSS  240
VISSQSMHLG VLATASHAVM TSTLFVVYYK PRTSQFIVGL NKYLEAINNK FSVGMRFKMR  300
FEGEDSPERR FTGTIVGVGD LSPHWSESKW RSLKVQWDEH ATVPRPDRVS PWEIEPFVAS  360
VPLNLAQPVV KSKRPKTVEI ASSEITTNSI ASPFWYQGSN QSVEPTQLGS VAEVQSSGSQ  420
AVWPPRQKES NGSSYSSSRI CAEGIWPSSP KVNVSLSLFA DSQEGNKNVS MGSTPPSFPS  480
PPSKPSNGPV HDQLETGKKS ESSSGFRLFG YDVPNSITAR FREREPMFTT VCCGAKGPIL  540
AAASELDQDL EISKISKEQM QVVSEMPPIE TQSKQGSTVS TRSRTKVHMQ GVAVGRAVDL  600
TALKGYDDLI NELEKMFEIK GELRPANKWA VVFTDDENDM MLLGDDQWQD FCRTVKKIFI  660
YSSDYVQMLR QGKQKNSALV CQETEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0ARF family protein