PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0360001

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 616aa MW: 67480.8 Da PI: 6.4544

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0360001	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.4	1.3e-13	447	493	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A++YI++Lq RcHm_v2.0_Chr1g0360001 447 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIDYINELQ 493 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MKMEMGLGGG VWKDEDKAMV AAVLGTRAFD YLISSSVSSN ENSCMGIGTD ESLHSKLSDL 60 VEPPNASNFS WNYAIFWQIS RSNSGDWVLC WGDGSCREPK EGEDSEASRI LSLRLEDETE 120 QTMRKIVLQK LHTLFGSSDE YNGALGLDRV TDTEMLFLAS MYFSFPRGEG GPGKCLASGK 180 QVWLSDLLKS GSDYCVRSFL ARSAGIQTIV LVPTDVGVVE LGSVRCIPEN LEMLQSIRLL 240 FSTQASLTRA KPMAALPVMS NKRDEIAAHQ NHLSTVERGG EGVPKIFGQD LNSGNPGRTR 300 YREKLAVRKV EERPWDAYSN GNRIAFSSPQ NGIHGSSWGQ SHVGVKQGSP AGVYASQGPV 360 NNLQELADGG RDDFRLKPYQ PQKQAPMQID FSGATSRPSV VSRPIVVESE NSDAEAPCKE 420 ELPGTAEERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS 480 LLGDAIDYIN ELQAKLKVME SERESVGGTS RDTSALVANP SSENQIRAPH VDIQAVHDVV 540 VVSVSCPLDS HPASRIIQAF KEAQISVVES KFTAANDSVF HTFVVKSQGS EQLTKEKLIA 600 AFSRESNSLQ SLSSVG

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MKMEMGLGGG VWKDEDKAMV AAVLGTRAFD YLISSSVSSN ENSCMGIGTD ESLHSKLSDL  60
VEPPNASNFS WNYAIFWQIS RSNSGDWVLC WGDGSCREPK EGEDSEASRI LSLRLEDETE  120
QTMRKIVLQK LHTLFGSSDE YNGALGLDRV TDTEMLFLAS MYFSFPRGEG GPGKCLASGK  180
QVWLSDLLKS GSDYCVRSFL ARSAGIQTIV LVPTDVGVVE LGSVRCIPEN LEMLQSIRLL  240
FSTQASLTRA KPMAALPVMS NKRDEIAAHQ NHLSTVERGG EGVPKIFGQD LNSGNPGRTR  300
YREKLAVRKV EERPWDAYSN GNRIAFSSPQ NGIHGSSWGQ SHVGVKQGSP AGVYASQGPV  360
NNLQELADGG RDDFRLKPYQ PQKQAPMQID FSGATSRPSV VSRPIVVESE NSDAEAPCKE  420
ELPGTAEERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS  480
LLGDAIDYIN ELQAKLKVME SERESVGGTS RDTSALVANP SSENQIRAPH VDIQAVHDVV  540
VVSVSCPLDS HPASRIIQAF KEAQISVVES KFTAANDSVF HTFVVKSQGS EQLTKEKLIA  600
AFSRESNSLQ SLSSVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	429	437	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein