PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0359091

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 350aa MW: 38922.5 Da PI: 6.2466

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0359091	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.2	1.7e-28	129	190	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK++ g+++pr+YYrCt++ gC ++k+v++s+ dp+++ +tY+g H+++ RcHm_v2.0_Chr1g0359091 129 LDDGYSWRKYGQKDILGAKYPRGYYRCTHRntqGCLATKQVQKSDADPTIFMVTYTGLHTCH 190 59*************************98889************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MEKRKSMMGN WEQKILKSEL TQGKELAQKL MNHLHHSSSS QEGEFLISKL LSSYEKALSV 60 LTRDVGSEGE IKQIQVLDSP CSFGNSSSPL SEISDQDCKN KNVFKKRKPM PKRTEEVKVC 120 SGTGQDGSLD DGYSWRKYGQ KDILGAKYPR GYYRCTHRNT QGCLATKQVQ KSDADPTIFM 180 VTYTGLHTCH LVAQLNGKQN VSLKQEAGTP RQTPEKSFSF GLRVKTENLD TREEGKKIFP 240 SFSFPPTPIE SENNVVEDHV FAAIANDFLG GSYAQTFGSP ATFESDYFAA VSPCHFGLVR 300 NDVQTSDSDL THEILSASTS VANSPIGDFG FSLEDLDFYP FENNPESTFP

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MEKRKSMMGN WEQKILKSEL TQGKELAQKL MNHLHHSSSS QEGEFLISKL LSSYEKALSV  60
LTRDVGSEGE IKQIQVLDSP CSFGNSSSPL SEISDQDCKN KNVFKKRKPM PKRTEEVKVC  120
SGTGQDGSLD DGYSWRKYGQ KDILGAKYPR GYYRCTHRNT QGCLATKQVQ KSDADPTIFM  180
VTYTGLHTCH LVAQLNGKQN VSLKQEAGTP RQTPEKSFSF GLRVKTENLD TREEGKKIFP  240
SFSFPPTPIE SENNVVEDHV FAAIANDFLG GSYAQTFGSP ATFESDYFAA VSPCHFGLVR  300
NDVQTSDSDL THEILSASTS VANSPIGDFG FSLEDLDFYP FENNPESTFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46400.1	4e-51	WRKY family protein