PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0357751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 226aa    MW: 25453.8 Da    PI: 9.0978
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0357751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32147205159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+++r ++d+++v++tYeg+Hnh+
  RcHm_v2.0_Chr1g0357751 147 LDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQIQRLSKDTSIVVTTYEGTHNHP 205
                             59********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MEGGQEHMNP PPTSSSTLPL SLPLILPPQN PSYQLFTPSG LNPPPLPLLQ PHDHQSLNPL  60
DIDWISLLSG QAGHHGLVSH DQISNYRAVT GMVDLSTATG SAGENTIEGD DDPEQKGCKK  120
RKVGGYKMRK ATRPRFAFQT RSTDDILDDG YRWRKYGQKA VKNSLYPRSY YRCTHHTCNV  180
KKQIQRLSKD TSIVVTTYEG THNHPCEKLM ETLTPLLRQM QFLSRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.15e-57WRKY family protein