PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0357671
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 329aa    MW: 36121 Da    PI: 7.9498
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0357671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30150208259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+ver+++dp ++++tY+ eHnh+
  RcHm_v2.0_Chr1g0357671 150 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERNRSDPGMFIVTYTAEHNHP 208
                             79*************************998****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MEDDWDLTAV VRGCSTVPTT TTNKPTNPFI TDHFHTSPLL SSFGQQGYVS DNTTQTFSVL  60
PLPPDPIKPT STIEELHDLY KPFFPKSQQT PSLLSPPPQI TPQPSFSSPQ PLHRHQQHQP  120
KLSATNPQRS KKRKNQLKKV CQVPAESLSS DVWAWRKYGQ KPIKGSPYPR GYYRCSSSKG  180
CMARKQVERN RSDPGMFIVT YTAEHNHPAP THRNSLAGST RHKPVSSPQS GSVTGGDNTK  240
PKGYSPSPAT SAEEELGRST TRMEAKEEKQ SPTADEDETE YFGVCDTIVS DDFFVGLEGL  300
AGDYFSDHFT ASFGGPWSSG NAATAASSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-79WRKY family protein