PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0352151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | G2-like | ||||||||
Protein Properties | Length: 117aa MW: 13571.5 Da PI: 9.7949 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 64.3 | 2.3e-20 | 64 | 113 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k r+ Wt eLH+rF++av+ + G++ A Pk+i +lm+v+gL + +v SHLQ RcHm_v2.0_Chr1g0352151 64 KRRVIWTDELHHRFLQAVKLI-GIDGARPKKIIQLMNVPGLMRRNVSSHLQ 113 689****************99.***************************** PP | |||||||
2 | Myb_DNA-binding | 31.7 | 3.5e-10 | 68 | 114 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqk 46 WT e++ ++++avk+ G + ++k+I + m+ g+ + ++ s++q RcHm_v2.0_Chr1g0352151 68 IWTDELHHRFLQAVKLIGIDgaRPKKIIQLMNvPGLMRRNVSSHLQV 114 6********************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence |
MDSLKNLWQF AFKNNRNVVI DITKEESNTH VESQAKIPNS ERERSEGMDN YVEKDSNCST 60 AFTKRRVIWT DELHHRFLQA VKLIGIDGAR PKKIIQLMNV PGLMRRNVSS HLQVCSM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 2e-18 | ARR-B family protein |