PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0351951
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 325aa    MW: 37470.9 Da    PI: 9.4552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0351951genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.5e-1482162996
                             HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                      B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                             +vl++g l +p +f e+++ k +   +  l++  + sW+v l  ++ sg+++++kGW+eFv  n+L+ g+ vvF++ g+ +f   v 
  RcHm_v2.0_Chr1g0351951  82 SVLQKGKLKIPQDFSEKFEVKVPH--QCHLQT-FSGSWRVDL--KRISGEFFFKKGWREFVVGNRLNLGEYVVFHYFGHAKF--DVE 161
                             789999************655444..466666.5569*****..*******************************9997777..555 PP

                             E CS
                      B3  96 v 96 
                             +
  RcHm_v2.0_Chr1g0351951 162 I 162
                             5 PP
2B341.32.8e-13233317294
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                               ++ + +v+k   l  p++f++++ ++  ++++l++    + sW+v+ i+  ++s+r  +++GW +Fvk+ngL+egD++ F+l++ 
  RcHm_v2.0_Chr1g0351951 233 SVQMCQTHVTKGP-LLTPRSFMRNIYKP--KKVELQV---GNMSWDVNWIHlYQSSSR--FSGGWLQFVKQNGLQEGDICDFELIS- 310
                             5677777888777.555*****888533..4444554...5599*****985444444..899********************997. PP

                             SEE..EE CS
                      B3  88 sefelvv 94 
                             ++fe  v
  RcHm_v2.0_Chr1g0351951 311 KTFEVAV 317
                             5554433 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MYHFLLFVGS WYITIYCSAG FLGFYTFIFL LSLAVSCAQM SKAYSPPKRR GSQANSVMGS  60
CSRRRENEDS KFPGFYKCVD YSVLQKGKLK IPQDFSEKFE VKVPHQCHLQ TFSGSWRVDL  120
KRISGEFFFK KGWREFVVGN RLNLGEYVVF HYFGHAKFDV EIYGHNRCSK KSDRLHDVTI  180
VDSDSDCEPQ NTEISLESEI ECASELGRRT HFSRRGRASN RATISRSGNP CFSVQMCQTH  240
VTKGPLLTPR SFMRNIYKPK KVELQVGNMS WDVNWIHLYQ SSSRFSGGWL QFVKQNGLQE  300
GDICDFELIS KTFEVAVMKV SIRKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.12e-12B3 family protein