PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0351671 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28181 Da PI: 9.5035 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 101.8 | 2.5e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ss RcHm_v2.0_Chr1g0351671 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 98.4 | 1e-32 | 81 | 171 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 +++++e +++e++kL++++++L r+qRhllGedL++Ls+keLq+Le+qLe +l++ R++K+++++eq+e+l+kke++l + n +Lr RcHm_v2.0_Chr1g0351671 81 STKRETECWYEEVSKLRAKYDSLLRTQRHLLGEDLGPLSVKELQNLEKQLEGALTQARQRKTQIMIEQMEHLRKKERQLGDLNLQLR 167 678899********************************************************************************* PP K-box 96 kkle 99 kl+ RcHm_v2.0_Chr1g0351671 168 DKLQ 171 *997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFSSA 60 GSMTQTLERY QRSSFSPHDN STKRETECWY EEVSKLRAKY DSLLRTQRHL LGEDLGPLSV 120 KELQNLEKQL EGALTQARQR KTQIMIEQME HLRKKERQLG DLNLQLRDKL QKEGENLKAI 180 QDFWSSNSAA TGNSNFLHSS QVSHIDPAPE PILQIGYHHY VAAESADVPK SMAMAAETNF 240 IQGWVL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-105 | MIKC_MADS family protein |