PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0349391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | YABBY | ||||||||
Protein Properties | Length: 221aa MW: 24515 Da PI: 8.1575 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 240.8 | 2.9e-74 | 15 | 184 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntila.vsvPstslfkvvtvrCGhCtsllsvnlakasq.llaaeshldeslkeelleelkveeenlksnv 86 d+ s s+q+Cyv+CnfC+t+la vsvP +slfk+vtvrCGhC++llsvn++ + a + hl++s+ + l +++ ++ sn+ RcHm_v2.0_Chr1g0349391 15 DHLSPSDQLCYVHCNFCDTVLAvVSVPCSSLFKTVTVRCGHCSNLLSVNMRGLLLpAAANQLHLGHSFFTQNLPQEEIRNAP--SNT 99 78899****************7369**********************99998775144445578888776644444333333..333 PP YABBY 87 ekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ ++ ++s++ ee+p++pp v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl RcHm_v2.0_Chr1g0349391 100 FSNQPNMMMNESFMPMIRGVEEIPKPPPvVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 184 3333333333343334678899***99989*****************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
MSAAASSNTV FSSPDHLSPS DQLCYVHCNF CDTVLAVVSV PCSSLFKTVT VRCGHCSNLL 60 SVNMRGLLLP AAANQLHLGH SFFTQNLPQE EIRNAPSNTF SNQPNMMMNE SFMPMIRGVE 120 EIPKPPPVVN RPPEKRQRVP SAYNRFIKEE IQRIKAGNPD ISHREAFSAA AKNWAHFPHI 180 HFGLMPDQPV KKANIRQDGE DMLIKDNGFF SAPANLGVSP Y |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 4e-80 | YABBY family protein |