PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0349141
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 701aa    MW: 77214.2 Da    PI: 5.8138
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0349141genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.96.6e-993397002374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             v++L+++Ae +++g+  laq +Larl+++ sp g+p+qR+a+yf+eAL+  l+   ++  ++ + s+ s    + ++aa+k fse+s
  RcHm_v2.0_Chr1g0349141 339 VDQLVNAAELIETGNPLLAQGILARLNQQLSPIGKPFQRAAFYFKEALELLLNM--NNSHSSANLSPFS---LIYKIAAYKSFSEIS 420
                             789*************************************************98..3344445555555...99************* PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                             P+l+f+++t+NqaIle+veg +rvH+iDfdi++G+QW++++q+ a R+ ++ppsl+iT+++ ++ +++ el  t+e+L++fA el++
  RcHm_v2.0_Chr1g0349141 421 PVLQFANFTCNQAILESVEGFNRVHVIDFDIGYGGQWASFMQEVALRNgGSPPSLKITAFVCSSMHDEFELAFTQENLKNFACELNL 507
                             ************************************************66688*********9999********************* PP

                    GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.adhnsesFlerflea 260
                              fe +++  ++l++   + L ++  E +aV + l + ++l++++sl+     vL++vk+lsPk+vv  e+  +d+ + +F +++++a
  RcHm_v2.0_Chr1g0349141 508 AFELEIVSIEALNS-GSWPLPLHGSEGVAVAVNLPIASFLNSRLSLPL----VLRFVKQLSPKIVVSLERGgSDRADIPFPHQIIQA 589
                             ******75555444.589999999999999999999****99999999....******************945569*********** PP

                    GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                             +++ys+l++sl+a   ++ ++ +k+Er ll+++i+++v+  + +   +++   +Wr  + ++GF+pv++s+++++qa++l++++++ 
  RcHm_v2.0_Chr1g0349141 590 VHCYSSLLESLDAV-NANLDALQKIERYLLQPSIEKIVMGCHLS--PKRTPTPSWRTLFLSSGFSPVTFSNFTESQADCLVQRTPVG 673
                             ***********887.5666999****************977776..5677799********************************** PP

                    GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                             g++ve+++ slvl+W+++ L+s+S Wr
  RcHm_v2.0_Chr1g0349141 674 GFHVEKRQSSLVLCWQRKDLISASGWR 700
                             **************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    
MKAMPLPFEE FQGKGVLDFS SDSSDLLASP APQGHHQQPQ KWKENCYVGS TEPTSVLDTR  60
RSPSPPTSSS TLSSSHGSGG GSGSTDTTPT TGVAAAAPAE NKPSEAGLEE AKCGPPLGME  120
DWESVLSESP GQEQSILKLM MSDIEDPSLG LNKLLQSGVG SHQDFGFHDV VEDQGYGAFE  180
EHNTGSSLPP GLFQQQQQLV EPLDEKPQIF NPHMVMNQNQ AQFNQNPAMF MPLSYSQLQD  240
HHFLSPPPAK RHNSGGFGPS YPGQRLPFLN PGQELMARVQ QQQQQQHQQQ QQHQQQQLLL  300
LPQHLQHRPV MLAAKDKMVN NLEGDKELMN NHQLHQAIVD QLVNAAELIE TGNPLLAQGI  360
LARLNQQLSP IGKPFQRAAF YFKEALELLL NMNNSHSSAN LSPFSLIYKI AAYKSFSEIS  420
PVLQFANFTC NQAILESVEG FNRVHVIDFD IGYGGQWASF MQEVALRNGG SPPSLKITAF  480
VCSSMHDEFE LAFTQENLKN FACELNLAFE LEIVSIEALN SGSWPLPLHG SEGVAVAVNL  540
PIASFLNSRL SLPLVLRFVK QLSPKIVVSL ERGGSDRADI PFPHQIIQAV HCYSSLLESL  600
DAVNANLDAL QKIERYLLQP SIEKIVMGCH LSPKRTPTPS WRTLFLSSGF SPVTFSNFTE  660
SQADCLVQRT PVGGFHVEKR QSSLVLCWQR KDLISASGWR C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-148GRAS family protein