PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0348611

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 439aa MW: 48763.9 Da PI: 8.3078

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0348611	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.1	2.9e-39	169	245	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++ l +akeyhrrhkvCe+hska++v+v gleqrfCqqCsrfh +sefDe+krsCrrrLa+hnerrrk + RcHm_v2.0_Chr1g0348611 169 RCQVEGCHVALVSAKEYHRRHKVCEMHSKASKVVVLGLEQRFCQQCSRFHVVSEFDESKRSCRRRLAGHNERRRKCS 245 6*************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MEMFGHNIGG RSGQNGNNAN LAWDIWEMNN SNNNGNNDIL YMTAATAAVT IAEPPSGSSA 60 SSEASLGHPL VHNNNGVQAV QQHFQNLYGG DHHHHQSRLR GSQYLPDPHL MCLKLGKRHY 120 FEDAPLPLLD HRDVAGFPLA VGGMKRGKNV YGPGSRGGGA STQSLKVPRC QVEGCHVALV 180 SAKEYHRRHK VCEMHSKASK VVVLGLEQRF CQQCSRFHVV SEFDESKRSC RRRLAGHNER 240 RRKCSHDSLP RSSSQEKKLM MAAAGRFPYL SSSPTGCSAL SLLSSSKSSS DSWVLSPSDL 300 SSRSRAALRE LIAENRAGIL ARQLISSSDR SNSNWEDSSH YNNHSTQDFG DYLSQSWPSG 360 SVESHHHHHH HQQQQQMFSA NQHSWDRFHE SGAHLTLDLM QQPPSPAYET FLPARDSSTK 420 AEDECDLWKW NSFQGASVV

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MEMFGHNIGG RSGQNGNNAN LAWDIWEMNN SNNNGNNDIL YMTAATAAVT IAEPPSGSSA  60
SSEASLGHPL VHNNNGVQAV QQHFQNLYGG DHHHHQSRLR GSQYLPDPHL MCLKLGKRHY  120
FEDAPLPLLD HRDVAGFPLA VGGMKRGKNV YGPGSRGGGA STQSLKVPRC QVEGCHVALV  180
SAKEYHRRHK VCEMHSKASK VVVLGLEQRF CQQCSRFHVV SEFDESKRSC RRRLAGHNER  240
RRKCSHDSLP RSSSQEKKLM MAAAGRFPYL SSSPTGCSAL SLLSSSKSSS DSWVLSPSDL  300
SSRSRAALRE LIAENRAGIL ARQLISSSDR SNSNWEDSSH YNNHSTQDFG DYLSQSWPSG  360
SVESHHHHHH HQQQQQMFSA NQHSWDRFHE SGAHLTLDLM QQPPSPAYET FLPARDSSTK  420
AEDECDLWKW NSFQGASVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	4e-38	SBP family protein