PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0347651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 68aa MW: 7786.05 Da PI: 6.5188 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 23.4 | 7.8e-08 | 1 | 23 | 20 | 42 |
HHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 20 ilKKAeELSvLCdaevaviifss 42 ++KK +EL +LC+++++ i++ss RcHm_v2.0_Chr1g0347651 1 MMKKLSELNTLCGIDACAIVYSS 23 69*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence |
MMKKLSELNT LCGIDACAIV YSSFDSQPEV WPSTSSVEKV LKQFKNMLMT EKSRKMLSQE 60 SYMRGDDL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 3e-21 | M-type_MADS family protein |