PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0346981
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 301aa    MW: 32899.6 Da    PI: 7.474
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0346981genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629e-20125179256
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             +k+ ++tkeq   Le++F++++++++++++eLA+kl+L+ rqV vWFqNrRa+ k
  RcHm_v2.0_Chr1g0346981 125 KKKLRLTKEQSLLLEDMFKEHHTLNTRQKQELAQKLNLSARQVEVWFQNRRARTK 179
                             788899***********************************************98 PP
2HD-ZIP_I/II117.38.8e-38125214191
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             +kk+rl+keq+ lLE++F+e+++L++++K+ela++L+l++rqv+vWFqnrRARtk+kq+E+d+++L++++++l+een+rL+kev+eL
  RcHm_v2.0_Chr1g0346981 125 KKKLRLTKEQSLLLEDMFKEHHTLNTRQKQELAQKLNLSARQVEVWFQNRRARTKLKQTEVDCDQLRKCCENLTEENRRLQKEVQEL 211
                             59************************************************************************************* PP

             HD-ZIP_I/II  88 reel 91 
                             r +l
  RcHm_v2.0_Chr1g0346981 212 R-AL 214
                             9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MGDKNDELGL SLGLGLGYGA KPSSSSSSSF HLNLMQNPET NHQRVFGIFG FTDRNATSFR  60
RGIDVNQAAV GDFEDENGVS SPNSTVSSLS GKRSERGEDN EAERTSCSLG GSDDEDGIGG  120
GDTSKKKLRL TKEQSLLLED MFKEHHTLNT RQKQELAQKL NLSARQVEVW FQNRRARTKL  180
KQTEVDCDQL RKCCENLTEE NRRLQKEVQE LRALKLSPQF YMQMNPPTTL TMCPSCQCVG  240
VSSSSSSSAS ATTASSTVPA TSPTGHPVQP TIHRPVPISP WATLPIPQHR PVDAPAPAPR  300
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130SKKKLRL
2174182RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.17e-72HD-ZIP family protein