PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0346681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 21087.6 Da PI: 10.1474 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.7 | 1.4e-18 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r++tf kR++g++KK +ELS+LC+++++v+i+s+ RcHm_v2.0_Chr1g0346681 11 ITNNSARKTTFKKRKKGMMKKLSELSTLCGVDACVVIYSP 50 89************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence |
MARKKVRMSY ITNNSARKTT FKKRKKGMMK KLSELSTLCG VDACVVIYSP FDSQPEVWPS 60 PSRVKNVLEK FKNMPMIEKS QKMLNQESFL RGMISKTNEQ LKKVRKQNHE KELRHTMFQS 120 LTTGIPQFQN LNLMDMGDLE QLINQKLDEI NSIIENLSEE VIENETKMSK LNNNACEGIH 180 GM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVRMSYITNNSARKTTFKKRK |
2 | 17 | 32 | RKTTFKKRKKGMMKKL |
3 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-38 | M-type_MADS family protein |