PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0345291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | Trihelix | ||||||||
Protein Properties | Length: 215aa MW: 23887.8 Da PI: 6.9366 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 67.9 | 2e-21 | 54 | 145 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +W+++e+ aLi+ +r+++ +lrrg+lk+++W++v++++ + ++++qC++k+e+l+kry+ + +++k+ s+ +s++++f RcHm_v2.0_Chr1g0345291 54 CWSHDETVALIDSYRDKWYSLRRGNLKATHWQDVADAVsrrcPAASPAKTAVQCRHKMEKLRKRYRTEIQRAKSMpLSRFTSSWVHF 140 8*******************************99998865556667799*************************977999******* PP trihelix 83 dqlea 87 ++++a RcHm_v2.0_Chr1g0345291 141 KRMDA 145 ***85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MASSPPSSPQ DDALIPLQSD PPQAVPLALP APPPPQLTPA SAPPPSSRRL PPPCWSHDET 60 VALIDSYRDK WYSLRRGNLK ATHWQDVADA VSRRCPAASP AKTAVQCRHK MEKLRKRYRT 120 EIQRAKSMPL SRFTSSWVHF KRMDAMEKGP AALKNENSDS PGEDGEDEEN DEEDDQDQEL 180 YEELRYGSNM KSMSKMYRNG VGVGVGGSGF RLGLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 2e-49 | Trihelix family protein |