PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0343041
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 724aa    MW: 83319 Da    PI: 8.4921
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0343041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.65.9e-1519109198
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ff + +++d+ +++ l+lp kf++++g  ke s   +l+ ++gr+W+v l  ++ ++r+++ k W+ F++   L+ gDf+ F+++g+
  RcHm_v2.0_Chr1g0343041  19 FFRIILQPDMQRQK-LRLPPKFVTKFG--KELSDVAILTVPTGRVWQVGL--ERVDKRIWFVKDWQAFAEYYSLRYGDFLEFRYEGN 100
                             67778888998887.***********8..45888899999**********..**********************************9 PP

                             SEE..EEEEE- CS
                      B3  88 sefelvvkvfr 98 
                             s+f  +v +f+
  RcHm_v2.0_Chr1g0343041 101 SNF--RVLIFD 109
                             999..888886 PP
2B348.12.1e-15263358198
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ff++ +++ +++ + l +p +fae++ +   +s  ++l+ ++g++W+v++  + +++  ++ +G  +F  +n+L+egD+++F+l+++
  RcHm_v2.0_Chr1g0343041 263 FFSIILQPFNFTYCYLHVPTDFAEKYLSG--CSESIKLQGSHGKQWDVRFE-STNPSLPIICRGCFQFLTDNNLEEGDVCLFELMKS 346
                             77888899999***************544..7778***************4.44444478889*********************987 PP

                             .SEE..EEEEE- CS
                      B3  88 .sefelvvkvfr 98 
                               +  l+v+++r
  RcHm_v2.0_Chr1g0343041 347 kADVVLKVSILR 358
                             788888888877 PP
3B351.41.9e-164445311199
                             HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                      B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                             +++  l +p +fa+++ ++  +   ++l+d++g +W+v+++ ++ s++   +++G + F  +++L++gD+++F+l++r++  l+v+v
  RcHm_v2.0_Chr1g0343041 444 FNNFHLLIPVPFARRYLSS--CAEFIKLQDSNGGQWDVQCSSTNASSSvLRFGRGYNVFLTDKNLEQGDVCLFELIKRNDVLLKVSV 528
                             567789**********766..5557***************997766665999************************99888899999 PP

                             E-S CS
                      B3  97 frk 99 
                             +r+
  RcHm_v2.0_Chr1g0343041 529 LRA 531
                             987 PP
4B350.24.7e-166357191199
                             HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                      B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                             + ++ lv+p +f ++h g++  +++ +tle ++g++  v++iy   +++  +++GW+ F ++n+L+egD++vF+l+ +++  l+ ++
  RcHm_v2.0_Chr1g0343041 635 H-KSFLVVPAEFDTKHlGYE--CPIFITLEAPNGKRCHVRCIYATDRKK--ISGGWSAFSSENNLEEGDVCVFELTASKDVVLKASI 716
                             3.4459******99996655..999****************99666666..99**********************988888888888 PP

                             E-S CS
                      B3  97 frk 99 
                             fr+
  RcHm_v2.0_Chr1g0343041 717 FRA 719
                             875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    
MESKTHRRSD FPASVPFHFF RIILQPDMQR QKLRLPPKFV TKFGKELSDV AILTVPTGRV  60
WQVGLERVDK RIWFVKDWQA FAEYYSLRYG DFLEFRYEGN SNFRVLIFDM TCSEIAYPCQ  120
EQSSDLHSMG IHEEDMENDG VCDTLGTATP LFHASMKRKC KCLDKHVLER RHVLHPGSNL  180
NKCIKRGVTS KENMLYQSDN ETRRKKTRYV DEGDTINSSS VMKSAPASLK ENRMPSSLEL  240
LTKQNDDKKV IQATRMFKPK NPFFSIILQP FNFTYCYLHV PTDFAEKYLS GCSESIKLQG  300
SHGKQWDVRF ESTNPSLPII CRGCFQFLTD NNLEEGDVCL FELMKSKADV VLKVSILRAA  360
EYEDTIDSSN VKKSKRAKLN QNRMCGSQDF STGQNKDDGM FAFDIFSHTY PKWKLKFPKE  420
TEKVTYATRM FNLKNPFFAV ILQFNNFHLL IPVPFARRYL SSCAEFIKLQ DSNGGQWDVQ  480
CSSTNASSSV LRFGRGYNVF LTDKNLEQGD VCLFELIKRN DVLLKVSVLR ASEYEDMVHD  540
KEKKLDEIKS RSYRNGHEEE IPELVGRLNE KGKSPSHKLS AEDEGNTEFC NSGTLYYSSK  600
IEKTVMSKES RRAFNAAKKF KTENPAFLVF LRHYHKSFLV VPAEFDTKHL GYECPIFITL  660
EAPNGKRCHV RCIYATDRKK ISGGWSAFSS ENNLEEGDVC VFELTASKDV VLKASIFRAA  720
EFAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-54B3 family protein