PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0342441

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 360aa MW: 39668.4 Da PI: 8.1728

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0342441	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	135	6.9e-42	116	244	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssas 83 a+kkdrhski T++g+RdRRvRls+++a++fFdLqd LGfdk+skt+eWLl ++ +aik+l ++ +s+s+s++++ +++ + RcHm_v2.0_Chr1g0342441 116 AVKKDRHSKIFTSQGLRDRRVRLSINVAREFFDLQDLLGFDKASKTLEWLLSNSTKAIKDLEKSkcnnsTSISSSSTSDCDDVLDIN 202 78************************************************************54333111111112222222222 PP TCP 84 nsssgkaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 ++++ ++++ k+aa +a+ srakarararertrekm+ ++ RcHm_v2.0_Chr1g0342441 203 -------NEASDDKRRKMKEAA--AIMARASRAKARARARERTREKMCSTS 244 .......222223344444444..78888*****************885 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MCSSTNNNIS SSGTVFPFPP YNFPFSSSSS HNSHHPLLPQ ENTICGGIFG LHHDQFSLLN 60 NCLLSPGPES TLVNLGGASS NAIVPSSGGY QQHYGYGNNI THPYFVSKEV RVPVVAVKKD 120 RHSKIFTSQG LRDRRVRLSI NVAREFFDLQ DLLGFDKASK TLEWLLSNST KAIKDLEKSK 180 CNNSTSISSS STSDCDDVLD INNEASDDKR RKMKEAAAIM ARASRAKARA RARERTREKM 240 CSTSTRSPQI CSQLSLFNEL EHADMNKEPG STLLSICQAE YHESVALKRE LKAPSVSNYH 300 DRSLELNPKS TEPSSNCCSH INIQFPNAIS QNYWDISGTV FTCPSICAIT TNMNLNSTGS

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MCSSTNNNIS SSGTVFPFPP YNFPFSSSSS HNSHHPLLPQ ENTICGGIFG LHHDQFSLLN  60
NCLLSPGPES TLVNLGGASS NAIVPSSGGY QQHYGYGNNI THPYFVSKEV RVPVVAVKKD  120
RHSKIFTSQG LRDRRVRLSI NVAREFFDLQ DLLGFDKASK TLEWLLSNST KAIKDLEKSK  180
CNNSTSISSS STSDCDDVLD INNEASDDKR RKMKEAAAIM ARASRAKARA RARERTREKM  240
CSTSTRSPQI CSQLSLFNEL EHADMNKEPG STLLSICQAE YHESVALKRE LKAPSVSNYH  300
DRSLELNPKS TEPSSNCCSH INIQFPNAIS QNYWDISGTV FTCPSICAIT TNMNLNSTGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	5e-28	TCP family protein