PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0337011

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 456aa MW: 50995.6 Da PI: 6.0534

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0337011	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	250	296	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er+RR ++N++f+ Lrel+P++ +K++ a+++ A++YI++L RcHm_v2.0_Chr1g0337011 250 TKHFATERQRRVQLNDKFHALRELVPNP-----TKPDRASVVGDAIDYIQEL 296 78************************.....9**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MYVDSTSAAA ACNFDPSTNN PMSESAPEVV LHSHNTTTTF AHEENLRRLS MEEELSNYHH 60 NAAMEIEQQF QNEMDFGTMD QNTTTNAHFV NPFDTHQATN WDTSNEMQQQ LPPTPDLLSL 120 FHLPSSSSVL PHSSINFPHP KTPGGCFPGS FGYEALPETP SGAAASSVMY DPMFHLNQLP 180 PQPQPPLFRE LLQSLPHGYN LGGSRNGSSL FSNGGDEVDD GSRQLFENGV LEFSKEMKPF 240 GRGRGGNKGT KHFATERQRR VQLNDKFHAL RELVPNPTKP DRASVVGDAI DYIQELKRTV 300 SELKLLVEKK RCGRERSKRH KTEQDIGAGD DDESCNMKPL GDHDHDHSYN NGSLRSSWLQ 360 RKSKDTEVDV RIIDDEVTIK LVQRKKINLL LSVSKLLDEL QLELHHAAGG HIGNSYSFLF 420 NTKMYEGSSL YASAIANKLI ETLDRQYAAI PPTNSY

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MYVDSTSAAA ACNFDPSTNN PMSESAPEVV LHSHNTTTTF AHEENLRRLS MEEELSNYHH  60
NAAMEIEQQF QNEMDFGTMD QNTTTNAHFV NPFDTHQATN WDTSNEMQQQ LPPTPDLLSL  120
FHLPSSSSVL PHSSINFPHP KTPGGCFPGS FGYEALPETP SGAAASSVMY DPMFHLNQLP  180
PQPQPPLFRE LLQSLPHGYN LGGSRNGSSL FSNGGDEVDD GSRQLFENGV LEFSKEMKPF  240
GRGRGGNKGT KHFATERQRR VQLNDKFHAL RELVPNPTKP DRASVVGDAI DYIQELKRTV  300
SELKLLVEKK RCGRERSKRH KTEQDIGAGD DDESCNMKPL GDHDHDHSYN NGSLRSSWLQ  360
RKSKDTEVDV RIIDDEVTIK LVQRKKINLL LSVSKLLDEL QLELHHAAGG HIGNSYSFLF  420
NTKMYEGSSL YASAIANKLI ETLDRQYAAI PPTNSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	3e-77	bHLH family protein