PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0336291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 21562.3 Da PI: 10.5271 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.8 | 1.1e-16 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r++tf kR+n ++KK ELS+LC++e++ ii+s+ RcHm_v2.0_Chr1g0336291 11 ITNNSARKTTFKKRKNNMMKKLRELSTLCGIEACAIIYSP 50 89************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence |
MARRKQRMAC ITNNSARKTT FKKRKNNMMK KLRELSTLCG IEACAIIYSP FDFEPEVWPS 60 SYAIENALKK LKDMPAIEKS RKMLSQESYL KGMISKAYAK LKRVRRENHE KELKAVMFQS 120 LTKGIPQFQN LNLMDMDDLG RLIIQKLNEI DNKKKSLREE VTESQNQTIQ LTPIVNMVNP 180 NPHQI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RRKQRMACITNNSARKTTFKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-39 | M-type_MADS family protein |