PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0334881

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 617aa MW: 67698.5 Da PI: 6.4466

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0334881	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.9	6.8e-52	24	151	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 l+pGfrFhPtdeelv +yLk+kv +k++++ ++i++vdiyk+ePwdL k ++k++++e+yfFs dkky +g r nrat+ gyWka RcHm_v2.0_Chr1g0334881 24 LAPGFRFHPTDEELVIYYLKRKVCRKPFKF-NAISDVDIYKSEPWDLAcKsSLKSRDQEYYFFSALDKKYGNGARMNRATHLGYWKA 109 579************************9.89**********85347788999************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+d++v++ ++++vg+kktLvf++grap+g++t+Wvmheyrl RcHm_v2.0_Chr1g0334881 110 TGNDRPVKH-NNKTVGMKKTLVFHSGRAPDGKRTNWVMHEYRL 151 *****.999**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MGHELTPSTI TPPLSKPPAA PTALAPGFRF HPTDEELVIY YLKRKVCRKP FKFNAISDVD 60 IYKSEPWDLA CKSSLKSRDQ EYYFFSALDK KYGNGARMNR ATHLGYWKAT GNDRPVKHNN 120 KTVGMKKTLV FHSGRAPDGK RTNWVMHEYR LVDTEMEKPG NGVPQDAYVL CRVFHKSNIG 180 PPNGHRYAPF VEEEWDDEKL TFVPGEVARD DTVVSRDSVG NRCDAVKVGN DHDSVVGGNH 240 RDVPMVGNVV GGNRRDVVVI GNGHDSVVGG ATRDVVVANG CHAVVVANGR DTVVGNGHHA 300 AVGGNGHAAA CIEEKVHAAV DIDQKDHVAA VVEQKDNASA SIEQKDHDVC LGGGPSVDGH 360 VQDTMMEVDG HGTTEEGNVH GSIRGNGHDG RSTGNYFVQD TQKISNALLS ATELPKDSQA 420 VLLPCKREKL DDDPMTCVVN REERLDDYPS PLGDDPQPLL SLFNQQPGIL RQYKRRRHNE 480 SNSNRSNASE ISSGLTHDPC SSTTTTASTE TSVTATTKRN FLSALVEFQL LESLEPKDKT 540 PVAPPEFNAA LHNSSVPSSC LKFIESLQNE IHKISIEKET LKFEMLSAQA VINILQSRID 600 LLNKENEDLK RNAREAE

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MGHELTPSTI TPPLSKPPAA PTALAPGFRF HPTDEELVIY YLKRKVCRKP FKFNAISDVD  60
IYKSEPWDLA CKSSLKSRDQ EYYFFSALDK KYGNGARMNR ATHLGYWKAT GNDRPVKHNN  120
KTVGMKKTLV FHSGRAPDGK RTNWVMHEYR LVDTEMEKPG NGVPQDAYVL CRVFHKSNIG  180
PPNGHRYAPF VEEEWDDEKL TFVPGEVARD DTVVSRDSVG NRCDAVKVGN DHDSVVGGNH  240
RDVPMVGNVV GGNRRDVVVI GNGHDSVVGG ATRDVVVANG CHAVVVANGR DTVVGNGHHA  300
AVGGNGHAAA CIEEKVHAAV DIDQKDHVAA VVEQKDNASA SIEQKDHDVC LGGGPSVDGH  360
VQDTMMEVDG HGTTEEGNVH GSIRGNGHDG RSTGNYFVQD TQKISNALLS ATELPKDSQA  420
VLLPCKREKL DDDPMTCVVN REERLDDYPS PLGDDPQPLL SLFNQQPGIL RQYKRRRHNE  480
SNSNRSNASE ISSGLTHDPC SSTTTTASTE TSVTATTKRN FLSALVEFQL LESLEPKDKT  540
PVAPPEFNAA LHNSSVPSSC LKFIESLQNE IHKISIEKET LKFEMLSAQA VINILQSRID  600
LLNKENEDLK RNAREAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.1	1e-100	NAC family protein