PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0333801
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 317aa    MW: 36163.4 Da    PI: 6.5001
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0333801genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.16.5e-2791872127
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....................................... 49 
                             pp +r +Pt  el++++L+kk   k+ ++ ++i+++d++k+eP++Lp                                        
  RcHm_v2.0_Chr1g0333801   9 PPEYRCRPTKTELLCDHLAKKNWCKDSQIMSIIPDIDLCKHEPRELPGnpspepehhqfqlssmiqscllccffaglaftrqenlgr 95 
                             777999********************9**99***************95599**********************************99 PP

                     NAM  50 .............kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektd 120
                                          +  +  ++ +wyfF++r+ ky++++r+nr+t +g Wk tgkd+++++  +++++g k++L+f k   pk++kt 
  RcHm_v2.0_Chr1g0333801  96 klyfdfffwftraE--SwySQGKWYFFAPREYKYPNSTRSNRTTGEGSWKVTGKDRDIKAPgSEAVIGRKRILTFQKRGVPKSHKTG 180
                             99999999877442..2435669*************************************9666779******************** PP

                     NAM 121 Wvmheyr 127
                              v+hey 
  RcHm_v2.0_Chr1g0333801 181 YVIHEYY 187
                             *****95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MSCDHLPVPP EYRCRPTKTE LLCDHLAKKN WCKDSQIMSI IPDIDLCKHE PRELPGNPSP  60
EPEHHQFQLS SMIQSCLLCC FFAGLAFTRQ ENLGRKLYFD FFFWFTRAES WYSQGKWYFF  120
APREYKYPNS TRSNRTTGEG SWKVTGKDRD IKAPGSEAVI GRKRILTFQK RGVPKSHKTG  180
YVIHEYYHIQ PHSDPPKQIG DFVVCCLKYK PVSDHDEDAP FCNRGSGSCS MVSNVANQAE  240
ENLASNEQFN GTDDEAETGG GWITEAEQHL AYKRDGLRTA IGNQNEFQGS QTDPCNLWTS  300
VEGQADRSNS SHMIEEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.32e-24NAC family protein