PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0333731
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 499aa    MW: 56518.2 Da    PI: 5.1431
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0333731genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.65.6e-45111421126
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                             +p+G+rFhPt+eelv++yLkkkv+g +  e+++vi+e+d++k+eP +Lp+    +++a++ ew+fF++r+ ky++++r+nr+tk+gy
  RcHm_v2.0_Chr1g0333731  11 VPVGYRFHPTEEELVNHYLKKKVHGGNdSEINQVIPEIDLCKYEPAELPAllgtETEAHDMEWFFFTRRAYKYNKSSRSNRSTKKGY 97 
                             599*********************9985677788***************656666666788************************** PP

                     NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmhey 126
                             Wk tgk++ ++++ +++++g+kktL+fy+gr pk++kt+Wv+he 
  RcHm_v2.0_Chr1g0333731  98 WKITGKERGIKARrSKAVIGMKKTLTFYQGRVPKSKKTSWVIHEC 142
                             ***********98566779************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    
MSSERTTPLS VPVGYRFHPT EEELVNHYLK KKVHGGNDSE INQVIPEIDL CKYEPAELPA  60
LLGTETEAHD MEWFFFTRRA YKYNKSSRSN RSTKKGYWKI TGKERGIKAR RSKAVIGMKK  120
TLTFYQGRVP KSKKTSWVIH ECYLPGNGVI KQTQGDFVIC RLKIRSDKKD SSVSNEGEPG  180
SASVSEMNQE GNEELLFHQP QPLDDCCSSA LQSPVSQKLE AVLQTNVTND DCNELQSPFG  240
DSDSCLLDGN EVSTCDENEA VYDVFPQLRD LPDQNLDSLF GPLQPQECCH TVLQSPIYTK  300
LRDVPHPLQP QEYCPSILQS PIYTKLQDVL HPPQPQDYEP SKFQSPIYTK LGSVPHPLQP  360
QDYQPSKLQL PIYTKLGTVP DANLYCGECN NWQFAVKKNV STDEVGILVR QIMSNFENQA  420
TDFKIPEVHH PQTKGNLESV VYPFQPQNFT SQPLMYTEFG DALHNTESNE LQSSFGDNDS  480
SLTKFLNTNF AYQDCYSVD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-39NAC family protein