PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0333721
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 277aa    MW: 31971.2 Da    PI: 7.1263
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0333721genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.93.9e-40101551128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkya..t 70 
                             lp GfrF+P+deel+++yL+kk + k+ ++e +i+e+d++k+eP+dLp+               ++++ + +wyfFs+r  k++  +
  RcHm_v2.0_Chr1g0333721  10 LPTGFRFQPSDEELLSHYLEKKNQCKDPQIEAIIPEIDVCKHEPRDLPAlvftraeflerewftMADSPDMQWYFFSPRVFKHSksK 96 
                             699***************************999***************66899999999988755555677*******987766336 PP

                     NAM  71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             ++r+nr+t++g Wk++gkd++++++ +++++g k++L+fy+   +k +ktdWv+hey l
  RcHm_v2.0_Chr1g0333721  97 STRSNRTTEEGSWKKQGKDRRITQArSDKQIGGKRILTFYQTGLQKKQKTDWVIHEYYL 155
                             88*********************9867889**********9999999**********87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MMMSSGCITL PTGFRFQPSD EELLSHYLEK KNQCKDPQIE AIIPEIDVCK HEPRDLPALV  60
FTRAEFLERE WFTMADSPDM QWYFFSPRVF KHSKSKSTRS NRTTEEGSWK KQGKDRRITQ  120
ARSDKQIGGK RILTFYQTGL QKKQKTDWVI HEYYLTKADS DEQIGDFVLC RLKKKLDKSD  180
HDKQDGPFCG GGEPSRGSCS MAFNVENQAS KQLGNVLSIS VEGQPDSCNS SDSDMVEEVR  240
TKMHFDFCYE IFNLKHKKYI ENVTNTILFV ILDLTAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-28NAC family protein