PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0333231

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 437aa MW: 49528.6 Da PI: 6.5977

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0333231	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.4	5.5e-30	114	199	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +++g++rs k+Ckek+enl k+ykk+keg+ +r ++ +++++f+qle RcHm_v2.0_Chr1g0333231 114 RWPRQETLTLLEIRSSLDSKFKETNQKGPLWDEVSRIMsEDHGYHRSGKKCKEKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLE 198 8***********************************888*************************98..55667*****8 PP trihelix 87 a 87 a RcHm_v2.0_Chr1g0333231 199 A 199 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MDDYPDLRQL MASRTQQLVQ FPDPFSVRPY NNFHPNSIVV GHEVNAHEFF EFGSSASAAG 60 APPNFSTIIS NSSVAGNLNG STAASSVGSL YGLELMNQHA WNINGNDGSG NNSRWPRQET 120 LTLLEIRSSL DSKFKETNQK GPLWDEVSRI MSEDHGYHRS GKKCKEKFEN LYKYYKKTKE 180 GKAGRQDGKH YRFFRQLEAI YGDQSTTNPL SSASDQTHLT GTLNPTLLYN HTTATINQEN 240 QEVKLGAESL SFSNNSTDLE TSSSENNGDD LSNSANDHSK NENQIRCSRR MKKTWKTQVE 300 GFVNSQMMKV MKAQEGWMEK MLKTIEGREE ERLAKEEEWR KREAERFNQQ VHEFWANERA 360 WVETRDASIM EALSQIRGIG TNSYNTKAKD ESMGLQLTDG GLLSSSSNYM NMNSTSFYIP 420 TNEGENLWNR YGGKLSK

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MDDYPDLRQL MASRTQQLVQ FPDPFSVRPY NNFHPNSIVV GHEVNAHEFF EFGSSASAAG  60
APPNFSTIIS NSSVAGNLNG STAASSVGSL YGLELMNQHA WNINGNDGSG NNSRWPRQET  120
LTLLEIRSSL DSKFKETNQK GPLWDEVSRI MSEDHGYHRS GKKCKEKFEN LYKYYKKTKE  180
GKAGRQDGKH YRFFRQLEAI YGDQSTTNPL SSASDQTHLT GTLNPTLLYN HTTATINQEN  240
QEVKLGAESL SFSNNSTDLE TSSSENNGDD LSNSANDHSK NENQIRCSRR MKKTWKTQVE  300
GFVNSQMMKV MKAQEGWMEK MLKTIEGREE ERLAKEEEWR KREAERFNQQ VHEFWANERA  360
WVETRDASIM EALSQIRGIG TNSYNTKAKD ESMGLQLTDG GLLSSSSNYM NMNSTSFYIP  420
TNEGENLWNR YGGKLSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-70	Trihelix family protein