PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0326161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27967.7 Da PI: 9.1354 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.9 | 6.2e-19 | 9 | 45 | 15 | 51 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +R +++lKKA+ELS+LCdaeva+i fs++g+l+eyss RcHm_v2.0_Chr1g0326161 9 RRHATLLKKANELSILCDAEVAIIAFSPDGELHEYSS 45 5999*******************************96 PP | |||||||
2 | K-box | 28.1 | 8.4e-11 | 81 | 158 | 21 | 98 |
K-box 21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + L+++ + L+ e+ +++G++L+ Ls L L +q k+l + skK ell e++++++ +e+++ +en L++kl RcHm_v2.0_Chr1g0326161 81 KQELQERHKALRLEKLQRMGKELDGLSSDALATLLEQQTKGLLAVHSKKVELLEEKLQRSRTREEQAMHENGLLEEKL 158 45799*******************************************************************999986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MPKTANPGRR HATLLKKANE LSILCDAEVA IIAFSPDGEL HEYSSTSMEH TLERYKNRTG 60 LVLPSRVESP APEEHRHEPA KQELQERHKA LRLEKLQRMG KELDGLSSDA LATLLEQQTK 120 GLLAVHSKKV ELLEEKLQRS RTREEQAMHE NGLLEEKLLR SRSREEQTMH ENKSLRRRIG 180 GFMMRQNYKR HILSCHPANY FDRNFGNRMG FCTSSRAAVS VSNYPSEGTD DHLDMTTLRL 240 WPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 1e-22 | MIKC_MADS family protein |