PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0324311 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | SRS | ||||||||
Protein Properties | Length: 305aa MW: 32095.8 Da PI: 8.7591 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 180.8 | 5.8e-56 | 120 | 266 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst 89 sg +C+dCGn+akk+C+++RCRtCC+ rg+dC+thv+stWvpaa+rrerq + a + as + + + + ++ + RcHm_v2.0_Chr1g0324311 120 SGMRACKDCGNRAKKGCEYSRCRTCCRGRGYDCSTHVRSTWVPAARRRERQMGVTVAVAGGVASGGGGEGSSGSS----SVAKRPRV 202 57789*********************************************9998888776655443333222222....22222333 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s++++ +l +slP++v+++avf+c rv++v++ge+e+aYq++v+i+GhvfkG+Lyd+G+++ RcHm_v2.0_Chr1g0324311 203 MMPSKNANANL-RQSLPDQVRVPAVFKCHRVTAVSNGEAEIAYQATVKISGHVFKGLLYDRGVDK 266 33444444333.456************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence |
MLGLRDILLI APNHSSVHQQ NQPISSDHPA LPLPSSTALG VGLGIFPLLT ATPCGQNAPT 60 ADGNPDNSRF WSLRTYPELN SSKQDMLSFG NHGAAESQQV AESDDGNVNG EGGGRGGEDS 120 GMRACKDCGN RAKKGCEYSR CRTCCRGRGY DCSTHVRSTW VPAARRRERQ MGVTVAVAGG 180 VASGGGGEGS SGSSSVAKRP RVMMPSKNAN ANLRQSLPDQ VRVPAVFKCH RVTAVSNGEA 240 EIAYQATVKI SGHVFKGLLY DRGVDKKNEY PCISHMHLGS GSNQRNGDSS SPTVPPSNVC 300 VASTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.1 | 4e-55 | SRS family protein |