PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0319641
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 479aa    MW: 54235.4 Da    PI: 6.4631
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0319641genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.24e-139584741374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lL  cA++v+sg+ e+a+  L+++s+las  gd+mqR+aayfteALa r+++  ++lykal++++ s  + +ee+++ +lf+++
  RcHm_v2.0_Chr1g0319641  58 LIQLLQGCAHHVASGSIEQANVWLEQISQLASAGGDTMQRIAAYFTEALADRMLKGLPGLYKALNSTKLS--SIAEEIHIKRLFFDL 142
                             6899************************************************************999998..59************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                             +P+lk+s++++NqaI+ea+ege++vHiiD+   +++QW++L+q+L++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+ ++
  RcHm_v2.0_Chr1g0319641 143 CPFLKLSYVITNQAIVEAMEGEKMVHIIDLHSFEPAQWINLIQTLNARPEGPPHLRITGIHE----HKEVLEQMAARLTEEAEKHDI 225
                             **************************************************************....9******************** PP

                    GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............................................... 214
                             pf+fn+ ++++le+l++e+Lrvk+gEalaV++vlqlh+ll                                               
  RcHm_v2.0_Chr1g0319641 226 PFQFNA-IVSKLENLDVESLRVKTGEALAVCSVLQLHSLLatdddmtrrksplatnnlqkvmhinkrtlgewlekdpisayclspds 311
                             ******.7999**************************************************************************98 PP

                    GRAS 215 .......desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                                      s     +  ++L ++++lsPk++v++eqe++hn++++++r++eal+yy+alfd+le++++r+s er+kvE++l+g+ei
  RcHm_v2.0_Chr1g0319641 312 slsplslGASP----KMGSFLTALWGLSPKLMVITEQESNHNGHTLMDRIIEALHYYAALFDCLESTVSRASMERQKVEKMLFGEEI 394
                             86653333333....5677******************************************************************** PP

                    GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             +n+++ceg++r+erhe+lekW  rle +GF+ v+ls++  +qak +lr ++ dgy+++e++g+lv++W+drpL+svSaWr
  RcHm_v2.0_Chr1g0319641 395 KNIISCEGTDRKERHEKLEKWILRLELSGFGRVQLSYHGRMQAKKMLRDYGYDGYEIKEDNGCLVICWHDRPLFSVSAWR 474
                             *******************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    
MSVLFVDQKM AQEDGSPVTS SAMYFPGLGS PYPWLSPGIG SPYPWLRELK SEERGLCLIQ  60
LLQGCAHHVA SGSIEQANVW LEQISQLASA GGDTMQRIAA YFTEALADRM LKGLPGLYKA  120
LNSTKLSSIA EEIHIKRLFF DLCPFLKLSY VITNQAIVEA MEGEKMVHII DLHSFEPAQW  180
INLIQTLNAR PEGPPHLRIT GIHEHKEVLE QMAARLTEEA EKHDIPFQFN AIVSKLENLD  240
VESLRVKTGE ALAVCSVLQL HSLLATDDDM TRRKSPLATN NLQKVMHINK RTLGEWLEKD  300
PISAYCLSPD SSLSPLSLGA SPKMGSFLTA LWGLSPKLMV ITEQESNHNG HTLMDRIIEA  360
LHYYAALFDC LESTVSRASM ERQKVEKMLF GEEIKNIISC EGTDRKERHE KLEKWILRLE  420
LSGFGRVQLS YHGRMQAKKM LRDYGYDGYE IKEDNGCLVI CWHDRPLFSV SAWRFRRYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein