PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0318281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 258aa MW: 29205 Da PI: 6.5382 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.3 | 8.5e-28 | 13 | 63 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien+ rqvtfskRr+g+lKKA+EL +LCdaevavi+fs+tgkl+e+ss RcHm_v2.0_Chr1g0318281 13 KKIENTNSRQVTFSKRRAGLLKKAQELAILCDAEVAVIVFSNTGKLFEFSS 63 68***********************************************96 PP | |||||||
2 | K-box | 72.8 | 1e-24 | 80 | 176 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 s++ +e++ +e ++++ Lk+e+e+Lq++q +llG+dL+sLsl eLq+Le+qL ++l ++++kK++ll+eq+e+++ ke+++ +e RcHm_v2.0_Chr1g0318281 80 SETALVESRAEEDDPKDVDVLKDELEKLQQNQLRLLGNDLSSLSLTELQKLENQLTEGLFSVKEKKDKLLMEQLEQSRVKEQRAIHE 166 3333478888899999*********************************************************************** PP K-box 91 nkaLrkklee 100 n++Lrk++ee RcHm_v2.0_Chr1g0318281 167 NETLRKQVEE 176 *******987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MKKKMGRGKI EIKKIENTNS RQVTFSKRRA GLLKKAQELA ILCDAEVAVI VFSNTGKLFE 60 FSSAGMKQTI ARYSKCYESS ETALVESRAE EDDPKDVDVL KDELEKLQQN QLRLLGNDLS 120 SLSLTELQKL ENQLTEGLFS VKEKKDKLLM EQLEQSRVKE QRAIHENETL RKQVEELQRL 180 FPQADHAVPS YLDYCPVEKQ NSPVYHGAKS PDLVSNFAID NGDSDTTLQL GLPSDTYRKR 240 KAPERESHSN DSGSQLGL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 5e-88 | MIKC_MADS family protein |