PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr1g0316201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YA | ||||||||
Protein Properties | Length: 180aa MW: 20134.3 Da PI: 10.3479 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.9 | 7.1e-33 | 9 | 65 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh+hAlrR+Rg+gGrF RcHm_v2.0_Chr1g0316201 9 EEPVYVNAKQYHGILRRRQSRAKAELERKL-IKVRKPYLHESRHQHALRRARGCGGRF 65 69****************************.**************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence |
MPLPLEMEEE PVYVNAKQYH GILRRRQSRA KAELERKLIK VRKPYLHESR HQHALRRARG 60 CGGRFLNTKK QDDSDANSSS EKTINLDANF SPKSAKSGFE CFPNDSNGNF VSSNVQQEGS 120 GSWFRTLNNH TLSNGNGSGH VPSSLTYRTT FNDGKEGVFL GQQKETIQLN GSSRGAIHSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.1 | 1e-35 | NF-YA family protein |